Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: marker-gene-analysis
wshuai294/PStrain
Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
Language: Shell - Size: 98.4 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 8 - Forks: 2
steineggerlab/ufcg
UFCG: Universal Fungal Core Genes
Language: Java - Size: 71.1 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 26 - Forks: 0
nsalomonis/altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Language: Python - Size: 264 MB - Last synced: 27 days ago - Pushed: almost 2 years ago - Stars: 91 - Forks: 28
Russel88/DAtest
Compare different differential abundance and expression methods
Language: R - Size: 1.54 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 46 - Forks: 9
mikemc/metacal
Metagenomics calibration R package
Language: R - Size: 1.63 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 17 - Forks: 4
jungsoh/high-throughput-sequence-data-handling-course
Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment
Language: HTML - Size: 28.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
itsmisterbrown/microfiltR
accessory functions for processing microbial community data
Language: R - Size: 3.84 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 12 - Forks: 11
mikemc/mgs-bias-manuscript
Analysis for McLaren, Willis, and Callahan (2019)
Language: R - Size: 10.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 4 - Forks: 3