GitHub topics: otu

Repositories

Grice-Lab/HmmUFOtu

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

Language: C++ - Size: 53.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 9

stuartnankai/MasterThesis

Language: Python - Size: 72.1 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

lentendu/NetworkNullHPC

OTU co-occurrence network inferrence base on null model for HPC

Language: Shell - Size: 110 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 4

Amarilli/belly-button-challenge

Building an interactive dashboard to explore the Belly Button Biodiversity dataset using JavaScript, D3, Plotly, HTML and CSS.

Language: JavaScript - Size: 7.73 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

Russel88/DAtest

Compare different differential abundance and expression methods

Language: R - Size: 1.54 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 46 - Forks: 9

scott-rdl/OTU-table-to-KRONA-pie

This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.

Language: Shell - Size: 5.86 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.

Language: Java - Size: 264 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0