Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: phylogenetic-placement
yatisht/usher
Ultrafast Sample Placement on Existing Trees
Language: C++ - Size: 39.1 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 117 - Forks: 40
naturalis/barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Language: Python - Size: 3.32 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 3
nf-core/phyloplace
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Language: Groovy - Size: 2.7 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 5 - Forks: 2
Grice-Lab/HmmUFOtu
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
Language: C++ - Size: 53.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 9
lczech/gappa
A toolkit for analyzing and visualizing phylogenetic (placement) data
Language: C++ - Size: 11.3 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 55 - Forks: 6
phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Language: Python - Size: 7.82 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 11 - Forks: 9
wiegertj/BAD
Tool for estimating the difficulty of phylogenetic placements
Language: Python - Size: 4.29 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0
phylo42/RAPPAS
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Language: Java - Size: 47.5 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 9 - Forks: 3
lczech/thesis
My dissertation / PhD thesis
Language: TeX - Size: 88.6 MB - Last synced: 10 months ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 0