GitHub topics: phylogenetic-placement
yatisht/usher
Ultrafast Sample Placement on Existing Trees
Language: C++ - Size: 41.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 133 - Forks: 47
nf-core/phyloplace
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Language: Nextflow - Size: 3.43 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 12 - Forks: 5
TurakhiaLab/WEPP
Wastewater-Based Epidemiology using Phylogenetic Placements
Language: C++ - Size: 3.19 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 7 - Forks: 0
lczech/gappa
A toolkit for analyzing and visualizing phylogenetic placement data
Language: C++ - Size: 11.3 MB - Last synced at: 3 days ago - Pushed at: 7 months ago - Stars: 63 - Forks: 7
phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Language: Python - Size: 7.84 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 12 - Forks: 9
Grice-Lab/HmmUFOtu
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
Language: C++ - Size: 53.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 11 - Forks: 9
naturalis/barcode-constrained-phylogeny
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Language: Python - Size: 3.32 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 3
wiegertj/BAD
Tool for estimating the difficulty of phylogenetic placements
Language: Python - Size: 4.29 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
phylo42/RAPPAS
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
Language: Java - Size: 47.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 3
lczech/thesis
My dissertation / PhD thesis
Language: TeX - Size: 88.6 MB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0