Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: otu-table
AlejandroAb/CASCABEL
Automated pipeline for amplicon sequence analysis
Language: Python - Size: 46.2 MB - Last synced: about 5 hours ago - Pushed: 1 day ago - Stars: 10 - Forks: 3
marlaux/Metabarcoding-script-by-script
Former version of METAPIPE
Language: Shell - Size: 12.9 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 1 - Forks: 0
gauravcodepro/metagenomics-abundance-normalize
a metagenomics abundance normalizer which will take the abundance OTUs file and gives you a normalized ratio for plotting of the species
Language: Python - Size: 12.7 KB - Last synced: 9 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0
JuliaTurkuDataScience/MicrobiomeAnalysis.jl
Functions and workflows for the analysis of microbiome data.
Language: Julia - Size: 1.67 MB - Last synced: 18 days ago - Pushed: 12 months ago - Stars: 3 - Forks: 1
RJauss/otutableNMDS
Multidimensional Scaling for OTU abundance tables and implementation to ggplot
Language: R - Size: 1.51 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
scott-rdl/OTU-table-to-KRONA-pie
This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.
Language: Shell - Size: 5.86 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 0
TlaskalV/NMDS_shiny
App for fast NMDS plots
Language: R - Size: 598 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 5 - Forks: 1
nishattasnim11/16S_soilgut
MSc - 16S sequence datasets, amplicon analysis, and stats
Language: R - Size: 443 KB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 2 - Forks: 0
rforbiodatascience21/group_12_project
Repository for the Exam project of group 12 in the course "R for bio datascience".
Language: R - Size: 58.4 MB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
karamveerverma37/Silva_output_merger
Silva OTU count table merger
Language: Perl - Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
mmtechslv/PhyloMAF
Next Generation Phylogenetic Microbiome Analysis Framework
Language: Python - Size: 86.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0
mmtechslv/DGRPy
DGRPy is a python package for DGRP microbiome data analysis
Language: Python - Size: 2.35 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0
k8hertweck/FieldLabComparison
microbiome analysis of ant colonies
Language: Shell - Size: 1.27 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 2
aortiz24/FieldLabComparison Fork of k8hertweck/FieldLabComparison
microbiome analysis of ant colonies
Language: Shell - Size: 133 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
