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GitHub / mmtechslv / PhyloMAF
Next Generation Phylogenetic Microbiome Analysis Framework
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mmtechslv%2FPhyloMAF
Stars: 1
Forks: 0
Open Issues: 0
License: bsd-3-clause
Language: Python
Repo Size: 86.5 MB
Dependencies:
38
Created: almost 5 years ago
Updated: over 2 years ago
Last pushed: about 2 years ago
Last synced: about 1 year ago
Topics: 16s-rrna, bioinformatics, greengenes, microbiome, microbiome-analysis, ott, otu-table, phylogenetic-trees, phylogenetics, silva, taxonomic-classification, taxonomy, taxonomy-assignment
Files
Dependencies
- Cython ==0.29.23
- biom-format ==2.1.10
- biopython >=1.77
- coverage ==5.5
- dateparser >=1.0.0
- docutils ==0.16
- ete3 >=3.1.2
- execnet ==1.8.1
- fuzzywuzzy >=0.18.0
- numpy >=1.20.2
- pandas >=1.2.4
- pytest >=6.2.4
- pytest-cov ==2.12.1
- scikit-bio >=0.5.6
- sphinx-copybutton ==0.3.3
- sphinx-git ==11.0.0
- sphinx-hoverxref ==0.6b1
- sphinx-prompt ==1.4.0
- sphinx-rtd-theme ==0.5.2
- sphinxcontrib-bibtex ==2.3.0
- tables >=3.6.1
- urllib3 >=1.26.4
- Cython *
- biom-format *
- biopython *
- dateparser *
- ete3 *
- execnet *
- fuzzywuzzy *
- numpy *
- pandas *
- pytest *
- scikit-bio *
- tables *
- urllib3 *