Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: mothur
NerdVerse2024/Milk_metagenomics
Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur
Size: 147 KB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0
SchlossLab/mothur-snakemake-workflow
Snakemake template for microbial amplicon sequence analysis with mothur.
Language: Python - Size: 949 KB - Last synced: 15 days ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0
Shuyib/mouse_gut_OTU
Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.
Language: Jupyter Notebook - Size: 91.8 KB - Last synced: about 1 month ago - Pushed: about 6 years ago - Stars: 0 - Forks: 1
SchlossLab/schtools
Schloss Lab Tools for Reproducible Microbiome Research 💩
Language: R - Size: 5.46 MB - Last synced: 15 days ago - Pushed: 9 months ago - Stars: 28 - Forks: 11
csc-training/chipster-microbial
Microbial Community Analysis with Chipster
Size: 2.59 MB - Last synced: 2 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 1
marius44/mothur_protocols
Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).
Language: R - Size: 24.4 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 2 - Forks: 0
joycewang914/Nursing_Home_Patient_Gut_Microbiota
Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.
Language: R - Size: 207 KB - Last synced: 11 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0
SchlossLab/Sovacool_OptiFit_mSphere_2022 📦
The manuscript accompanying the OptiFit algorithm in mothur
Language: Python - Size: 140 MB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 2
dizak/mothulity
Easy-to-use tool facilitating work with Mothur.
Language: JavaScript - Size: 29.3 MB - Last synced: 25 days ago - Pushed: almost 4 years ago - Stars: 3 - Forks: 3
achillesrasquinha/16SMaRT
16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
Language: Python - Size: 2.77 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 7 - Forks: 0
biocorecrg/microbiome_procedures
Mothur procedures for 16S and ITS analysis
Language: R - Size: 124 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 3 - Forks: 6
campenr/mothur-py
Python wrapper for the bioinformatics tool mothur
Language: Python - Size: 119 KB - Last synced: 16 days ago - Pushed: about 6 years ago - Stars: 6 - Forks: 2
bathyscapher/Metabarcoding-Pipeline-Building
CUSO Microbiome analysis workshop 2020
Language: R - Size: 19.9 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
k8hertweck/FieldLabComparison
microbiome analysis of ant colonies
Language: Shell - Size: 1.27 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 2 - Forks: 2
aortiz24/FieldLabComparison Fork of k8hertweck/FieldLabComparison
microbiome analysis of ant colonies
Language: Shell - Size: 133 KB - Last synced: about 1 year ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0
