jolespin/veba

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

Language: Python - Size: 55 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 84 - Forks: 11

genomic-medicine-sweden/jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

Language: Nextflow - Size: 66.5 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 10 - Forks: 10

Clinical-Genomics/microSALT

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

Language: Python - Size: 1.69 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 3

sourceduty/Microbiology_Simulator

🔬 Simulate microbiology scenarios and experiments.

Size: 1.95 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

Arkadiy-Garber/MagicLamp

A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

Language: HTML - Size: 36.4 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 13 - Forks: 5

muellsen/MNA

MATLAB scripts and functions for Microbial Network Analysis (MNA)

Language: C++ - Size: 2.98 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 2

mblmicdiv/course2017

Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.

Language: Standard ML - Size: 101 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 21 - Forks: 8

Wishartlab-openscience/Biotransformer

A computational tool for the prediction and identification of metabolites.

Language: Java - Size: 69.2 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 1

dizak/mothulity

Easy-to-use tool facilitating work with Mothur.

Language: JavaScript - Size: 29.3 MB - Last synced at: 2 days ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 3

yhjung1231/Laundry-QMRAproject-2022

Quantitative microbial risk assessment modeling

Language: R - Size: 70.3 KB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

sandain/ecosim

Ecotype Simulation: Models the sequence diversity within a bacterial clade.

Language: Java - Size: 18.3 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 1

IzabelShen/Abundance-occupancy

A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).

Language: R - Size: 4.73 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

mblmicdiv/TrunkRiver_amplicon_analysis

Microbial community samples collected from the Trunk River in Woods Hole, MA 2014-2016.

Language: HTML - Size: 504 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

jflater/Nitrogen_cycle

Size: 0 Bytes - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0