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GitHub / genomic-medicine-sweden / jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genomic-medicine-sweden%2Fjasen

Stars: 8
Forks: 9
Open Issues: 18

License: gpl-3.0
Language: Nextflow
Repo Size: 19.8 MB
Dependencies: 3

Created: about 4 years ago
Updated: 17 days ago
Last pushed: 16 days ago
Last synced: 16 days ago

Topics: clinical, microbial, pipeline, resistance, typing

Files
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    Readme
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    Dependencies
    bin/pipeline_result_processor/setup.py pypi
    .github/workflows/docker-image.yml actions
    container/Dockerfile docker