alipirani88/snpkit

Modular workflow for Microbial Variant Calling and SNP diagnostics.

Language: Python - Size: 60.9 MB - Last synced: about 17 hours ago - Pushed: 1 day ago - Stars: 4 - Forks: 4

phac-nml/mikrokondo

A simple pipeline for bacterial assembly and quality control

Language: Nextflow - Size: 12 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 10 - Forks: 2

Pioreactor/pioreactor

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

Language: Python - Size: 7.23 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 87 - Forks: 6

neherlab/pangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

Language: Julia - Size: 35 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 75 - Forks: 6

oschwengers/bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Language: Python - Size: 61.3 MB - Last synced: 7 days ago - Pushed: 2 months ago - Stars: 395 - Forks: 42

nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Language: Nextflow - Size: 72.7 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 48 - Forks: 27

byu-biophysics/ImageAI

This repo serves as a guide for the BYU Image Segmentation group. We are attempting to identify structures in images created by Electron cryotomography.

Language: Jupyter Notebook - Size: 19 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 4

YogiOnBioinformatics/DAME-Destruction-of-Aqueous-Microfibers-Enzymatically

Destruction of Aqueous Microfibers Enzymatically (DAME): A novel Synthetic Biology systems approach to destroying Polyester-based Microplastic fibers

Size: 7.82 MB - Last synced: 15 days ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

DianaGzlz/OntoGenomeBact

Tesis de maestría: Asociación por aprendizaje profundo de k-meros genómicos con etiquetas ontológicas

Language: Python - Size: 4.28 MB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

voorloopnul/awesome-phages

A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.

Size: 16.6 KB - Last synced: 2 days ago - Pushed: almost 2 years ago - Stars: 40 - Forks: 5

bacpop/bacpop-website

Code for group website

Language: HTML - Size: 23.7 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 4

Ecogenomics/GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Language: Python - Size: 28.7 MB - Last synced: 22 days ago - Pushed: 23 days ago - Stars: 430 - Forks: 83

aglabx/OantigenMiner

Wonderful O-antigens Operons Finder

Language: Jupyter Notebook - Size: 17.9 MB - Last synced: 23 days ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

EngineerDanny/CS685-Microbe-Network-Research-Code

This repo contains my cross-validation ML analysis for training and testing co-occurrence network inference algorithms

Language: Jupyter Notebook - Size: 12.1 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 1 - Forks: 0

jhayer/baargin

Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow

Language: Nextflow - Size: 15.3 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 6 - Forks: 0

prophyle/prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

Language: Python - Size: 30.3 MB - Last synced: 14 days ago - Pushed: 15 days ago - Stars: 31 - Forks: 5

shibarjun/napari-findaureus

napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).

Language: Python - Size: 111 MB - Last synced: 25 days ago - Pushed: 26 days ago - Stars: 0 - Forks: 0

xthua/bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

Language: F* - Size: 49.8 MB - Last synced: 27 days ago - Pushed: about 1 year ago - Stars: 16 - Forks: 8

karel-brinda/Phylign

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

Language: Python - Size: 7.09 MB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 20 - Forks: 4

B-UMMI/chewBBACA

BSR-Based Allele Calling Algorithm

Language: HTML - Size: 73.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 118 - Forks: 26

labgem/PPanGGOLiN

Build a partitioned pangenome graph from microbial genomes

Language: Python - Size: 131 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 206 - Forks: 25

kjolley/BIGSdb

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

Language: Perl - Size: 383 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 55 - Forks: 19

bacpop/PopPUNK

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Language: Python - Size: 115 MB - Last synced: 25 days ago - Pushed: 2 months ago - Stars: 79 - Forks: 16

mbhall88/NanoVarBench

Evaluating Nanopore-based bacterial variant calling

Language: Python - Size: 34.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 0

Zebbeni/protozoa

A simulation of protozoan behavior and evolution

Language: Go - Size: 4.34 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 27 - Forks: 6

AlexK-1/Bacteria-simulation

Simulation of bacteria with food, predators, herbivores, GUI

Language: JavaScript - Size: 68.4 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 1

Godrigos/mediadb

A small android application project listing commonly used microbiology culture media.

Language: Dart - Size: 1.88 MB - Last synced: 15 days ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

oschwengers/platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Language: Python - Size: 37.4 MB - Last synced: 23 days ago - Pushed: 8 months ago - Stars: 98 - Forks: 15

adamd3/OrthoQuant

A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.

Language: Nextflow - Size: 30.4 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

solaranamnesis/ferdinand-julius-cohn

Public Domain Works by Ferdinand Julius Cohn (1828-1898).

Language: TeX - Size: 4.31 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

the-alquemist/GMI-PAN

Bacterial plasmid annotation pipeline

Language: Python - Size: 5.16 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

roorik2011/Py-Bacteria-Lab

Py-Bacteria-Lab is a simulation project focused on modeling bacteria resembling Escherichia coli.

Language: Python - Size: 86.9 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

Language: Python - Size: 6.06 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

deprekate/prfect

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

Language: Python - Size: 878 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 7 - Forks: 1

eead-csic-compbio/get_homologues

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Language: Perl - Size: 76.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 99 - Forks: 25

snail123815/scanLapsePlot

From time-lapse scanned pictures to plots. Measure the greyness of selected area. Require ImageJ (or anything that can do the job) to mark target areas.

Language: Python - Size: 153 KB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

ICBI/viGEN

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

Language: Shell - Size: 30.3 MB - Last synced: about 2 months ago - Pushed: 2 months ago - Stars: 26 - Forks: 15

AdmiralenOla/Scoary

Pan-genome wide association studies

Language: Python - Size: 2.51 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 137 - Forks: 34

karel-brinda/MiniPhy

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]

Language: Python - Size: 5.85 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 8 - Forks: 0

biodatlab/bacteria-detection

Deep Learning-Based Object Detection and Bacteria Morphological Feature Extraction for Antimicrobial Resistance Applications

Language: Python - Size: 216 MB - Last synced: 24 days ago - Pushed: 6 months ago - Stars: 5 - Forks: 2

CCB-SB/plsdb

PLSDB pipeline to collect bacterial plasmids from NCBI

Language: Python - Size: 1.06 MB - Last synced: 2 days ago - Pushed: 6 months ago - Stars: 31 - Forks: 4

ncrna/PathogenTrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

Language: Python - Size: 59.5 MB - Last synced: 19 days ago - Pushed: 8 months ago - Stars: 24 - Forks: 8

AlexK-1/Bacteria-simulation-zones

Simulation of bacteria surviving in a world with two zones: energy production and reproduction

Language: JavaScript - Size: 12.7 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

scbirlab/crispio

🌱 Designing CRISPRi experiments in bacteria

Language: Python - Size: 4.43 MB - Last synced: 22 days ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

siobhanschenk/siobhanschenk.github.io

personal website

Language: HTML - Size: 4.3 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

GiacomoGiacomelli/Cell-Profiles-and-Demographs

R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles

Language: R - Size: 8.4 MB - Last synced: 3 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

voorloopnul/decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

Language: Python - Size: 5.86 MB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 2

ctmrbio/BACTpipe

BACTpipe: An assembly and annotation pipeline for bacterial genomics

Language: Groovy - Size: 3.89 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 20 - Forks: 7

pg-space/panspace

Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes

Language: Jupyter Notebook - Size: 17.8 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

baynec2/nanopore_pipelines

Nanopore sequencing experimental protocols and computational pipelines

Language: Shell - Size: 333 KB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

johnlees/seer

sequence element (kmer) enrichment analysis

Language: C++ - Size: 1.32 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 40 - Forks: 9

DEMENT-Model/DEMENTpy

A spatially explicit trait- and individual-based microbial systems modelling framework

Language: Python - Size: 29.3 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 13 - Forks: 4

tracykuper/mimics

Multi-scale model of Metabolism In Cellular Systems

Language: Java - Size: 8.66 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

oschwengers/tadrep

Targeted Detection and Reconstruction of Plasmids

Language: Python - Size: 2.63 MB - Last synced: 9 days ago - Pushed: 10 days ago - Stars: 19 - Forks: 1

TIBHannover/BacDiveR

Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.

Language: R - Size: 3.22 MB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 11 - Forks: 12

henriksson-lab/btyper_website

An atlas of high-quality Bacillus cereus group genomes with standardized, manually curated metadata

Language: JavaScript - Size: 3.86 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

Unlimited-Research-Cooperative/Bacteria-Neural-Network

Creating bacterial colonies that will learn to play Pong, Go, DOOM, and encode/decode signals

Size: 10.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 5 - Forks: 0

tklammsteiner/eggsurfacemicrobiome

Reproducible documentation for "Heussler and Klammsteiner et al. (2023). Microbial influences on black soldier fly reproduction: A focus on egg surface colonization. Research Square Preprint"

Size: 18 MB - Last synced: 23 days ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

davidegat/GameOfBacteria

An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.

Language: Python - Size: 36 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

utubun/TxDb.Paeruginosa.PA14

Annotation data for Pseudomonas aeruginosa str. PA14

Language: R - Size: 420 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

utubun/TxDb.Ecoli.K12.MG1655

Annotation for full-genome assembly of Escherichia coli str. K12, substr. MG1655

Language: R - Size: 313 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

utubun/TxDb.Paeruginosa.PAO1

Genomic annotation for Pseudomonas aeruginosa str. PAO1, assembly ASM676v1.

Language: R - Size: 387 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

utubun/BSgenome.Paeruginosa.NCBI.PA14

Full genome of Pseudomonas aeruginosa, str. PA14 (NCBI)

Language: R - Size: 1.45 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

utubun/BSgenome.Paeruginosa.NCBI.PAO1

Full-genome assembly of Pseudomonas aeruginosa, str. PAO1

Language: R - Size: 1.39 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

utubun/BSgenome.Ecoli.NCBI.K12.MG1655

Full genome of E. coli, strain K12 MG1655

Language: R - Size: 1.08 MB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

jovieon/PartII_BTBproject

Code used to produce results and figures for BA Pathology project on the prospects of a BCG vaccine program in Great Britain. Developed by Joanna Vieira O'Neill, University of Cambridge.

Language: R - Size: 17.6 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

amarinderthind/CGRphylo

CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.

Language: R - Size: 1.11 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 2

dipcarbon/BacteriaMSLF

Language: Python - Size: 1.66 MB - Last synced: 5 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 2

quadram-institute-bioscience/socru

Order and orientation of complete bacterial genomes

Language: Python - Size: 226 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 23 - Forks: 6

xlxs4/bacteria-phage-abm

An Agent-Based Model simulating the coevolution dynamics between phages and bacteria. Was my essay in the ABM course by SFI

Language: NetLogo - Size: 26.4 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

creativequotient/mathsysbio

DMS1401ZB Mathematical Systems Biology

Language: Jupyter Notebook - Size: 831 KB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 4

balazshorvathreal/MegaVir

MegaVir is a bioinformatic pipeline for virome characterization and genome assembly.

Language: R - Size: 92.8 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0

mgalardini/pyseer

SEER, reimplemented in python 🐍🔮

Language: Python - Size: 73.4 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 81 - Forks: 23

amarinderthind/decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

Language: Perl - Size: 1.44 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 6 - Forks: 0

lrd3uu/gardnerella_pangenome

G. vaginalis metabolic model construction and biofilm pathway characterization

Language: Jupyter Notebook - Size: 55.7 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

tseemann/nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

Language: Perl - Size: 11.3 MB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 123 - Forks: 35

tseemann/sixess

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Language: Shell - Size: 36.9 MB - Last synced: 4 months ago - Pushed: about 6 years ago - Stars: 23 - Forks: 2

oschwengers/asap

A scalable bacterial genome assembly, annotation and analysis pipeline

Language: Groovy - Size: 13.6 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 62 - Forks: 18

kalilamali/bacteria_analyzer

Interactive program for handling data related to growth rates of different bacteria at different temperatures.

Language: Python - Size: 61.5 KB - Last synced: 18 days ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

davidegat/AntibiogramSimulator

A simple simulator that shows the easy way how an antibiogram works

Language: Python - Size: 2.11 MB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

tseemann/snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Language: Perl - Size: 124 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 408 - Forks: 111

tseemann/phastaf

Identify phage regions in bacterial genomes for masking purposes

Language: Perl - Size: 18.4 MB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 28 - Forks: 4

schwanbeck/YSMR

Bacterial video tracking & analysis

Language: Python - Size: 269 KB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 6 - Forks: 0

SchlossLab/Hannigan_ConjunctisViribus_ploscompbio_2018

Using graph database techniques to understand the infectious relationships between bacteria and phages.

Language: PostScript - Size: 449 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 2 - Forks: 4

k8hertweck/Blattabacteria

Analyzing a set of genes using phylogenetics and tests for selection

Language: HTML - Size: 32.5 MB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

fanglab/BEAST

Bacterial Epigenomics Analysis SuiTe

Language: R - Size: 360 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 9 - Forks: 2

EngqvistLab/Tome

A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

Language: Python - Size: 50.8 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 32 - Forks: 13

cornelliusyudhawijaya/Master_degree_project

Exploring the growth-dependent proteome of Tuwongella immobilis

Language: R - Size: 3.91 KB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0

brinkmanlab/MicrobeDB

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

Language: Shell - Size: 71.3 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

sauravbsaha/uCAREChemSuiteCLI

Predicts bacterial resistome

Language: R - Size: 153 KB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 1

LOBac/eXist-db

eXist-db scripts and data

Language: XQuery - Size: 2.93 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

LOBac/mysql-db

MySQL DB generation scripts

Size: 1.21 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

LOBac/mongo-db

MongoDB scripts and data

Language: Shell - Size: 3.91 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

JakobStenseke/Artificial-Chemotaxis-in-Dynamic-Environments

Artificial agents developing chemotaxis using probabilistic spiking perceptrons

Language: C# - Size: 32.4 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 7 - Forks: 0

microbialman/DDotCounter

Simple counting of bacterial colonies from pictures of plates.

Language: Processing - Size: 27.3 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 11 - Forks: 1

travis-m-blimkie/getPASequences

Submit PA locus tags and download annotations or sequences, and map to other strains

Language: CSS - Size: 27.5 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

GeeKboy2/Computer-vision-in-the-service-of-bacteriology

Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.

Language: Jupyter Notebook - Size: 7.77 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 1

Unlimited-Research-Cooperative/Human-Brain-Organoid-Bacterial-Neural-Link

Bacterial colonies attaching themselves to human brain organoids, as a neural link to a silicon computer

Size: 5.86 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 3 - Forks: 0

adamd3/BactSeq

A nextflow pipeline for performing bacterial RNA-Seq data analysis.

Language: Nextflow - Size: 2.36 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 7 - Forks: 1

bwmr/microbiome_morphology

Code and Data related to Wimmer and Morais et al (2023)

Language: R - Size: 1.48 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0