GitHub topics: bacteria
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Language: Perl - Size: 124 MB - Last synced at: about 4 hours ago - Pushed at: 9 months ago - Stars: 508 - Forks: 118
Matheussoranco/Bacterial-growth-and-analysis
A model for simulation and analysis of bacterial types an growth
Language: Python - Size: 5.86 KB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
Ecogenomics/GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Language: Python - Size: 28.6 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 512 - Forks: 84
two-frontiers-project/2FP_MAGUS
Pan-domain metagenomic binning via co-assembly
Language: Python - Size: 17.4 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0
pg-space/panspace
Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
Language: Jupyter Notebook - Size: 22.8 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 10 - Forks: 0
mbhall88/NanoVarBench
Evaluating Nanopore-based bacterial variant calling
Language: Python - Size: 37.4 MB - Last synced at: 3 days ago - Pushed at: 4 months ago - Stars: 18 - Forks: 1
Pioreactor/pioreactor
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Language: Python - Size: 11 MB - Last synced at: 8 days ago - Pushed at: 10 days ago - Stars: 111 - Forks: 10
labgem/PPanGGOLiN
Build a partitioned pangenome graph from microbial genomes
Language: Python - Size: 133 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 263 - Forks: 30
DEMENT-Model/DEMENTpy
A spatially explicit trait- and individual-based microbial systems modelling framework
Language: Python - Size: 29.4 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 14 - Forks: 7
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Language: Python - Size: 99.3 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 497 - Forks: 60
climatechangemicrobiology/ProGRN
Prokaryote Gene Regulatory Network (ProGRN) Inference Pipeline
Language: HTML - Size: 238 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 1 - Forks: 0
neherlab/pangraph
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Language: C - Size: 75.7 MB - Last synced at: 17 days ago - Pushed at: 25 days ago - Stars: 101 - Forks: 7
tseemann/sixess
🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files
Language: Shell - Size: 36.9 MB - Last synced at: 9 days ago - Pushed at: almost 7 years ago - Stars: 24 - Forks: 2
amarinderthind/decontaminer
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
Language: Perl - Size: 1.45 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 9 - Forks: 0
phac-nml/mikrokondo
A simple pipeline for bacterial assembly and quality control
Language: Nextflow - Size: 14 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 17 - Forks: 3
tseemann/nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Language: Perl - Size: 11.3 MB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 139 - Forks: 38
nf-core/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language: Nextflow - Size: 73.2 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 53 - Forks: 51
Danderson123/Amira
A tool to detect acquired AMR genes directly from long read sequencing data.
Language: Python - Size: 15.2 MB - Last synced at: 6 days ago - Pushed at: 11 days ago - Stars: 8 - Forks: 1
vimarconi/biotracker
Particle detection and tracking - A microswimmer tracker with automatic quantification of change of directions.
Language: Python - Size: 232 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 10 - Forks: 0
B-UMMI/chewBBACA
BSR-Based Allele Calling Algorithm
Language: HTML - Size: 75.9 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 141 - Forks: 28
scbirlab/crispio
🌱 Designing CRISPRi experiments in bacteria
Language: Python - Size: 4.45 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
bacpop/bacpop-website
Code for group website
Language: HTML - Size: 47.8 MB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 7
oschwengers/asap
A scalable bacterial genome assembly, annotation and analysis pipeline
Language: Groovy - Size: 13.6 MB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 73 - Forks: 19
eead-csic-compbio/get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Language: Perl - Size: 79.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 112 - Forks: 26
bacpop/PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
Language: Python - Size: 116 MB - Last synced at: 16 days ago - Pushed at: 28 days ago - Stars: 97 - Forks: 20
karel-brinda/MiniPhy
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
Language: Python - Size: 5.85 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 22 - Forks: 1
johnlees/seer
sequence element (kmer) enrichment analysis
Language: C++ - Size: 1.32 MB - Last synced at: 19 days ago - Pushed at: over 2 years ago - Stars: 43 - Forks: 10
NIB-SI/CampyDEA
Campylobacter jejuni biofilm differential expression analysis (DEA)
Language: R - Size: 19.5 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
EngineerDanny/CS685-Microbe-Network-Research-Code
This repo contains my cross-validation ML analysis for training and testing co-occurrence network inference algorithms
Language: Jupyter Notebook - Size: 12.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
siobhanschenk/siobhanschenk.github.io
personal website
Language: HTML - Size: 37.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
GunzIvan28/rMAP
Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
Language: Shell - Size: 6.27 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 22 - Forks: 17
amarinderthind/CGRphylo
CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.
Language: R - Size: 1.12 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 2
voorloopnul/awesome-phages
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Size: 16.6 KB - Last synced at: 8 days ago - Pushed at: almost 3 years ago - Stars: 48 - Forks: 5
adamd3/BactSeq
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Language: Nextflow - Size: 2.32 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 8 - Forks: 1
jhayer/baargin
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
Language: Nextflow - Size: 15.4 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 7 - Forks: 0
oschwengers/tadrep
Targeted Detection and Reconstruction of Plasmids
Language: Python - Size: 2.63 MB - Last synced at: 7 days ago - Pushed at: 12 months ago - Stars: 20 - Forks: 1
karel-brinda/Phylign
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
Language: Python - Size: 7.09 MB - Last synced at: 15 days ago - Pushed at: about 1 year ago - Stars: 27 - Forks: 7
xthua/bacant
This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.
Language: F* - Size: 49.8 MB - Last synced at: 14 days ago - Pushed at: almost 2 years ago - Stars: 20 - Forks: 7
Zebbeni/protozoa
A simulation of protozoan behavior and evolution
Language: Go - Size: 4.34 MB - Last synced at: 3 days ago - Pushed at: about 1 year ago - Stars: 33 - Forks: 6
onco-p53/manuscripts
Code and data for my scientific publications
Language: R - Size: 919 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 0
kjolley/BIGSdb
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Language: Perl - Size: 384 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 63 - Forks: 20
ayoraind/nxf_Tracs2
Nextflow pipeline incorporating the TRACS alignment step alone
Language: Nextflow - Size: 25.4 KB - Last synced at: 27 days ago - Pushed at: 27 days ago - Stars: 0 - Forks: 0
KThorellGroup/BACTpipe
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Language: Groovy - Size: 3.9 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 20 - Forks: 7
Rounge-lab/skin_microbiome_16S_seq_analyses
This repository contains code for pre-processing and analysis of 16S rRNA data used to generate results in the paper "Skin bacterial community dynamics of hands and forearms before and after military field exercise".
Language: R - Size: 176 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
schwanbeck/YSMR
Bacterial video tracking & analysis
Language: Python - Size: 349 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 0
ShawnKyzer/data-pipeline-microbiom-duckdb
A high-performance data pipeline built with Python and DuckDB for processing and analyzing Human Microbiome Project (HMP) bacterial genome data. Features include automated GenBank file processing, Prefect workflow orchestration, an interactive Streamlit dashboard for data exploration, and comprehensive test coverage. Perfect for bio researchers.
Language: Python - Size: 1.75 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
karel-brinda/phylogenetic-compression-supplement
Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"
Language: Python - Size: 34 MB - Last synced at: 15 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0
adamd3/StrainQuant
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
Language: Nextflow - Size: 30.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
ncrna/PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Language: Python - Size: 59.5 MB - Last synced at: about 18 hours ago - Pushed at: over 1 year ago - Stars: 27 - Forks: 8
tomdstanton/bart
bacterial read typer :dna: :skateboard: :microbe:
Language: Python - Size: 60.3 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 5 - Forks: 2
pseudogene/contiguator 📦
A bacterial genomes finishing tool for structural insights on draft genomes - Now in a Docker
Size: 14.6 KB - Last synced at: 20 days ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0
YannDubs/modellingBacterias
Useless project that tries to model the life of different bacterias in a petri dish: for learning purpose
Language: C++ - Size: 8.78 MB - Last synced at: about 1 month ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0
prophyle/prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
Language: Python - Size: 30.3 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 33 - Forks: 5
srom/archaea-vs-bacteria
Code from paper "Systematic genome-guided discovery of antagonistic interactions between archaea and bacteria"
Language: Jupyter Notebook - Size: 44.4 MB - Last synced at: 13 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0
CCB-SB/plsdb
PLSDB pipeline to collect bacterial plasmids from NCBI
Language: Python - Size: 13.3 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 35 - Forks: 4
Q-bio-Belgrade/TA_I_paper
Code for the paper "Bistability in Type I Toxin-Antitoxin Systems May Lead to Stress-Induced Persister Formation" by Sofija Markovic, Magdalena Djordjevic, Hong-Yu OU, and Marko Djordjevic.
Language: MATLAB - Size: 67.4 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
mgalardini/pyseer
SEER, reimplemented in python 🐍🔮
Language: Python - Size: 73.4 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 108 - Forks: 25
byu-biophysics/ImageAI
This repo serves as a guide for the BYU Image Segmentation group. We are attempting to identify structures in images created by Electron cryotomography.
Language: Jupyter Notebook - Size: 19.1 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 6
lucaparmigiani/Pangenome-Openness
Repository dedicated to the experiment section of the paper: Revisiting pangenome openness with k-mers. PCJ Math & Comp Biol. (2024).
Language: R - Size: 115 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
EazyEnder/OmFiT
Just some tools
Language: Python - Size: 29.4 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
AlexanderRama/BacteriaApp
Bacteria Detection App with CameraX and TFLite Implementation
Language: Kotlin - Size: 45.6 MB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Godrigos/mediadb
A small android application project listing commonly used microbiology culture media.
Language: Dart - Size: 2.04 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0
solaranamnesis/ferdinand-julius-cohn
Public Domain Works by Ferdinand Julius Cohn (1828-1898).
Language: TeX - Size: 4.34 MB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
bacpop/BacQuerya
Search engine for bacterial genomic information.
Language: JavaScript - Size: 1.05 MB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
tseemann/phastaf
Identify phage regions in bacterial genomes for masking purposes
Language: Perl - Size: 18.4 MB - Last synced at: 9 days ago - Pushed at: over 5 years ago - Stars: 30 - Forks: 4
cmkobel/comparem2
🦠📇 Genomes to report pipeline - for bacteria and archaea
Language: Python - Size: 84.1 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 27 - Forks: 2
EngqvistLab/orgtools
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
Language: Python - Size: 275 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
tgolubch/castanet
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
Language: Python - Size: 27.3 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1
Unlimited-Research-Cooperative/Bacteria-Neural-Network
Neural Net Bacteria - Creating bacterial colonies that will learn to play Pong, Go, DOOM, and encode/decode signals
Size: 10.2 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 6 - Forks: 0
iman2693/CTCB
This is the repository for the CTCB project
Language: Jupyter Notebook - Size: 192 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 3 - Forks: 0
deprekate/prfect
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes
Language: Python - Size: 878 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 1
raphaelrubrice/Biofilm-Simulator
Project aimed at programming an individual based model (cellular automaton approach) for modeling bacterial biofilms and interactions within them.
Language: Python - Size: 2.26 MB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
llxlr/Lactobacillus_Pentosus_Pangenome
戊糖乳杆菌泛基因组分析 | Pan-genome analysis of Lactobacillus Pentosus
Language: Python - Size: 18.7 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
alipirani88/snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.
Language: Python - Size: 60.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 4 - Forks: 4
YogiOnBioinformatics/DAME-Destruction-of-Aqueous-Microfibers-Enzymatically
Destruction of Aqueous Microfibers Enzymatically (DAME): A novel Synthetic Biology systems approach to destroying Polyester-based Microplastic fibers
Size: 7.82 MB - Last synced at: 12 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
DianaGzlz/OntoGenomeBact
Tesis de maestría: Asociación por aprendizaje profundo de k-meros genómicos con etiquetas ontológicas
Language: Python - Size: 4.28 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
aglabx/OantigenMiner
Wonderful O-antigens Operons Finder
Language: Jupyter Notebook - Size: 17.9 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
shibarjun/napari-findaureus
napari-findaureus: A tool designed to identify bacteria in infected bone tissue images obtained via Confocal Laser Scanning Microscopy (CLSM).
Language: Python - Size: 111 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0
xlxs4/bacteria-phage-abm.jl
A toy Agent-Based Model of the coevolution dynamics between bacteria and phages, with a focus on environment structure
Language: Julia - Size: 1.4 MB - Last synced at: 4 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
xlxs4/bacteria-phage-montecarlo
A toy MC model studying bacteria-phage coevolution dynamics. Code is meant to be readable instead of performant, or, well, good. Good for beginners in ABM
Language: Python - Size: 3.91 KB - Last synced at: 4 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
AlexK-1/Bacteria-simulation
Simulation of bacteria with food, predators, herbivores, GUI
Language: JavaScript - Size: 68.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1
oschwengers/platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Language: Python - Size: 37.4 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 98 - Forks: 15
the-alquemist/GMI-PAN
Bacterial plasmid annotation pipeline
Language: Python - Size: 5.16 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
roorik2011/Py-Bacteria-Lab
Py-Bacteria-Lab is a simulation project focused on modeling bacteria resembling Escherichia coli.
Language: Python - Size: 86.9 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
Language: Python - Size: 6.06 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1
moorembioinfo/FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
Language: Python - Size: 49.8 KB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
snail123815/scanLapsePlot
From time-lapse scanned pictures to plots. Measure the greyness of selected area. Require ImageJ (or anything that can do the job) to mark target areas.
Language: Python - Size: 153 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
ICBI/viGEN
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
Language: Shell - Size: 30.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 26 - Forks: 15
AdmiralenOla/Scoary
Pan-genome wide association studies
Language: Python - Size: 2.51 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 137 - Forks: 34
biodatlab/bacteria-detection
Deep Learning-Based Object Detection and Bacteria Morphological Feature Extraction for Antimicrobial Resistance Applications
Language: Python - Size: 216 MB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 2
AlexK-1/Bacteria-simulation-zones
Simulation of bacteria surviving in a world with two zones: energy production and reproduction
Language: JavaScript - Size: 12.7 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
GiacomoGiacomelli/Cell-Profiles-and-Demographs
R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles
Language: R - Size: 8.4 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
voorloopnul/decouphage
The art of decorating a phage genome by gluing feature cutouts into it.
Language: Python - Size: 5.86 MB - Last synced at: 11 days ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
baynec2/nanopore_pipelines
Nanopore sequencing experimental protocols and computational pipelines
Language: Shell - Size: 333 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
tracykuper/mimics
Multi-scale model of Metabolism In Cellular Systems
Language: Java - Size: 8.66 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
TIBHannover/BacDiveR
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
Language: R - Size: 3.22 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 11 - Forks: 12
tklammsteiner/eggsurfacemicrobiome
Reproducible documentation for "Heussler and Klammsteiner et al. (2023). Microbial influences on black soldier fly reproduction: A focus on egg surface colonization. Research Square Preprint"
Size: 18 MB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
davidegat/GameOfBacteria
An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.
Language: Python - Size: 36 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
Zabuzard/Antigen
Strategy game with cells, bacteria and viruses as units.
Language: C# - Size: 218 MB - Last synced at: 19 days ago - Pushed at: about 9 years ago - Stars: 5 - Forks: 1
utubun/TxDb.Paeruginosa.PA14
Annotation data for Pseudomonas aeruginosa str. PA14
Language: R - Size: 420 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
