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GitHub / amarinderthind / CGRphylo
CGR package for phylogeny. Pipeline compare multiple whole genome sequences using alignment free approach Chaos Game Representation (CGR). CRG core function creates the frequencies object for each sequence which can be used to calculate distances among sequences.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/amarinderthind%2FCGRphylo
Stars: 1
Forks: 2
Open Issues: 0
License: gpl-3.0
Language: R
Repo Size: 1.11 MB
Dependencies: pending
Created: almost 2 years ago
Updated: 6 months ago
Last pushed: 4 months ago
Last synced: 4 months ago
Commit Stats
Commits: 71
Authors: 1
Mean commits per author: 71.0
Development Distribution Score: 0.0
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/amarinderthind/CGRphylo
Topics: bacteria, cgrphylo, chaos-game, chaos-game-representation, crg, maximum-likelihood, neighbour-joining, phylogenetic-trees, phylogenetics, phylogenomics, phylogeny, phylogeny-plots, recombinant, sars-cov-2, virus, whole