GitHub topics: phylogenetic-compression
karel-brinda/MiniPhy
Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]
Language: Python - Size: 5.85 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 22 - Forks: 1
karel-brinda/Phylign
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
Language: Python - Size: 7.09 MB - Last synced at: 15 days ago - Pushed at: about 1 year ago - Stars: 27 - Forks: 7
karel-brinda/phylogenetic-compression-supplement
Supplementary repository for "Efficient and robust search of microbial genomes via Phylogenetic Compression"
Language: Python - Size: 34 MB - Last synced at: 15 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0
prophyle/prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
Language: Python - Size: 30.3 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 33 - Forks: 5
