GitHub / amarinderthind / decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

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Topics: bacteria, bioinformatics, cancer, contaminating-sequences, contamination, contamination-detection, decontaminer, decontaminer-pipeline, fungus, infections, investigation, microbes, ngs, omics, rna-seq, rnaseq, sequencing, unmapped-ngs-data, virus, virusscan

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