javiermerinom/gene_expression_breast_cancer-classification-analysis

This project explores breast cancer classification and survival analysis using RNA-seq data from The Cancer Genome Atlas (TCGA-BRCA). The workflow includes differential expression analysis (DEA), dimensionality reduction, and machine learning models for tumor vs. normal classification, cancer stage prediction, and patient survival analysis.

Language: Jupyter Notebook - Size: 16.5 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0

CarlosMoraMartinez/G4Micro

An R package with helper functions to automate microbiome analysis, including alpha and beta diversity, differential abundance analysis with DESeq2, machine learning, mediation analysis, and others.

Language: R - Size: 13.2 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 1

stemangiola/tidybulk

Brings bulk and pseudobulk transcriptomics to the tidyverse

Language: R - Size: 107 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 174 - Forks: 25

snakemake-workflows/rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

Language: Python - Size: 16.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 345 - Forks: 212

thelovelab/tximport

Transcript quantification import for modular pipelines

Language: R - Size: 368 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 141 - Forks: 34

vikos77/transcriptomics-workflows

Language: Python - Size: 241 MB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 0 - Forks: 0

complextissue/pytximport

Feature-rich Python implementation of the tximport package for gene count estimation.

Language: Python - Size: 108 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 37 - Forks: 2

layanomics/CrispAstro-Seq

End-to-end, reproducible RNA-seq pipeline replicating a published CRISPR-knockout study in human astrocytes (GSE185726), using STAR, DESeq2 (R), and cloud-based Bash workflows.

Language: Jupyter Notebook - Size: 26.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

nf-core/differentialabundance

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

Language: Nextflow - Size: 9.88 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 81 - Forks: 52

amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis

This RNAseq data analysis tutorial is created for educational purpose

Language: R - Size: 2.58 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 33 - Forks: 13

nasqar/deseq2shiny

a web-based R shiny application that wraps DESeq2 R package

Language: R - Size: 2.27 MB - Last synced at: about 1 month ago - Pushed at: over 5 years ago - Stars: 14 - Forks: 7

safabio/modplots

Collection of customised plotting functions.

Language: R - Size: 742 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

cemileblks/rna-seq-analysis

RNA-seq analysis of tumour-associated CD8+ T cells in Mus musculus using DESeq2 and GSEA.

Language: R - Size: 9.04 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

qbic-pipelines/rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

Language: Nextflow - Size: 62.5 MB - Last synced at: 2 days ago - Pushed at: 2 months ago - Stars: 32 - Forks: 24

leekgroup/regionReport

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Language: R - Size: 72.4 MB - Last synced at: 18 days ago - Pushed at: 8 months ago - Stars: 10 - Forks: 4

Nwinters29/Bioinformatics

Compilation of scripts pertaining to the field of Bioinformatics

Language: Python - Size: 3.17 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

jcaperella29/MI_RNA_SHINY

Interactive Shiny app for miRNA differential expression analysis, visualization, enrichment, machine learning classification, and power analysis — built for researchers and bioinformaticians

Language: R - Size: 1.63 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

andreyhgl/containeR-RNAseq

Singularity container for running RNAseq anlaysis

Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

NIGMS/Bulk-and-Single-Cell-RNAseq

In this module, you will take a deeper look at RNA-sequencing using single-cell approaches and miRNA sequencing, and investigate their impacts on gene regulation

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NIGMS/Data-Science-Foundations-in-R

This repository offers an introductory data science module using R and cloud computing on Google Cloud Platform (GCP). Key topics include R programming, Tidyverse (dplyr, tidyr, ggplot2), statistical methods (ANOVA, Linear Regression), and RNAseq analysis (Salmon, DESeq2).

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Uzezi93/Pleiotropy-and-Local-Adaptation-Silverleaf-Sunflower

Analysis pipeline to examine how gene pleiotropy influences local adaptation in Silverleaf Sunflowers

Language: R - Size: 39.6 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

shgopher/RFamily

R 语言基础，数据分析， 可视化，生物以及临床医学研究

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j-andrews7/iBET

interactive Bioinformatics Exploratory Tools

Language: R - Size: 741 KB - Last synced at: 4 months ago - Pushed at: 6 months ago - Stars: 5 - Forks: 0

stemangiola/ppcseq

Probabilistic outlier identification for bulk RNA sequencing data

Language: R - Size: 153 MB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 4

PF2-pasteur-fr/SARTools

Statistical Analysis of RNA-Seq Tools

Language: R - Size: 2.17 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 107 - Forks: 66

michalbukowski/dge-ontology

Jupyter notebooks for DGE results and ontology analysis and visualisation.

Language: Jupyter Notebook - Size: 3.02 MB - Last synced at: 20 days ago - Pushed at: 6 months ago - Stars: 0 - Forks: 1

vivekruhela/BRAINscape

An R package to visualize eQTL and DESeq2 analysis results through an interactive Shiny app for Hispanics and Non-Hispanics White (NHW) in MU-BRAINS dataset.

Language: R - Size: 169 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

merlinis12/RNA-Seq-Data-Analysis-in-R

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

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leekgroup/recount

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Language: R - Size: 90.2 MB - Last synced at: 13 days ago - Pushed at: 9 months ago - Stars: 41 - Forks: 9

12danielLL/Neurogenomics_Project

This project focuses on analyzing sequencing data to understand molecular mechanisms of neurological diseases and predict the effectiveness of immunotherapy in breast cancer patients. It integrates Python and R scripts for data processing, statistical analysis, and visualization, alongside a comprehensive report detailing methods and findings.

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nasqar/NASQAR

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

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LieberInstitute/recountWorkflow

Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/

Language: TeX - Size: 6.8 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 0

LeoooJR/ReproHackathon

A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.

Language: R - Size: 158 KB - Last synced at: 6 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

eonurk/RNA-seq-differential-analyses-guideline

A quick recap of widely used differential analyses methods in R for RNA-seq experiments

Size: 336 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 14 - Forks: 3

humzaashraf1/RNASeq-Analysis-of-Replicative-Aging

RNA-seq analysis from FASTQ to differential gene-expression using open-source tools

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SUGAM2001/DESeq2-Python-Example

This repository contains an example implementation of DESeq2 in Python.

Language: Python - Size: 2.1 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0

moritzmadern/BulkRNAseqAnalysis_from_countMatrix

R Markdown script to perform bioinformatic analysis of RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).

Language: R - Size: 101 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0

roybarkan2020/Abalone-RNAseq-meta-analysis

Gene expression and network analysis for multiple RNA-seq datasets associated with heat-stress in abalone

Size: 156 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

rohan-b-84/dge_analysis_using_DESeq2

Differential Gene Expression analysis in R using DESeq2

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francescopatane96/RNA-seq_Pipeline

Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

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michalbukowski/rnaseq-pipeline-2

Simple Nextflow RNA-Seq pipeline

Language: Nextflow - Size: 871 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

datasnakes/RNASeek

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

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hbctraining/DGE_workshop 📦

Language: HTML - Size: 37.2 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 329 - Forks: 162

nyuhuyang/RNAseq_pipeline

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

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meyermicrobiolab/Stony-Coral-Tissue-Loss-Disease-SCTLD-Project

R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract

Language: R - Size: 1.93 GB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 4 - Forks: 0

Kfalash/CVP-Testing

Code testing DESeq2 and ALDEx2 R packages against Clock Variability Paper

Language: R - Size: 108 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

chaochaowong/rmskStats

Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats

Language: R - Size: 22.5 KB - Last synced at: almost 2 years ago - Pushed at: almost 9 years ago - Stars: 0 - Forks: 0

dgavr/Single_Cell_Iterative_Pooling

Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene

Language: Python - Size: 16.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

washingtoncandeia/kallisto_sleuth

Análise de RNA-seq - Abundância de Transcritos Utilizando kallisto, tximport e DESeq2

Language: R - Size: 299 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

dgavr/Useful_small_scripts_for_DESeq2

Some useful scripts useful for parsing or writing DESeq2 Scripts

Language: Python - Size: 691 KB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0

ATA82/MotifSearcher

Here, we describe and provide an RNA-Seq analysis of a RIP assay to understand the mechanism of AML del(9q) progression. (Ali T. Abdallah)

Language: R - Size: 2.92 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

tdayris-perso/rna-dge-salmon-deseq2 📦

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Language: Python - Size: 3.15 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 2

raymondkiu/R-scripts-graphing-statistics

My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq

Language: R - Size: 794 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2

aprezvykh/bioinformatics

some scripts to process transcriptomics and Chip-seq data

Language: R - Size: 183 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 1

raqmejtru/BCH339N_Predicting_Tumor_Phenotypes_from_Gene_Expression

We use gene expression data to perform gene set enrichments and random forest predictions to distinguish between four tumor types.

Language: R - Size: 28.5 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

raqmejtru/mitonuclear-sd

Investigate the role of mtDNA in the sex determination/development of Potamilus streckersoni, a freshwater mussel with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.

Language: R - Size: 91.8 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

murailab/Ponroy2020_HMG

Code to reproduce Ponroy, et. al, 2020 in Human Molecular Gentetics

Language: R - Size: 3.52 MB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

Anneser/zebrafishTelencephalon

Analysis code for scRNA-seq and bulk sequencing data from zebrafish telencephalon

Language: Jupyter Notebook - Size: 3.78 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

jessmhoehner/Methods Fork of EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

bixBeta/DESeq2Shiny2

DESeq2Shiny2 is an R shiny application to handle NGS count data and perform unsupervised clustering and Differential Gene Expression Analysis using DESeq2.

Language: R - Size: 112 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

sachitsaksena/nfkb-tag-seq

Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.

Language: R - Size: 32.9 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1

oxpeter/goncalo2019

Language: Jupyter Notebook - Size: 18.5 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

boehmv/UPF3

Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD

Language: R - Size: 5.29 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

foreverstas/DGE_workshop_rus

https://foreverstas.github.io/DGE_workshop_rus/

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jyu-theartofml/RNA_seq_diff_expression

Differential expression analysis in R for RNA sequence reads of fission yeast.

Language: R - Size: 515 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

michalbukowski/aml-analysis

A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)

Language: Jupyter Notebook - Size: 41.2 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

peterlipan/DE_rpy2

Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2

Language: Jupyter Notebook - Size: 115 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 10 - Forks: 0

DarkoCucin/nextflow-deseq2-repo

Nextflow implementation of DESeq2 for Seven Bridges CAVATICA platform

Language: R - Size: 40 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

sivkri/miRNASeq-DE-Analysis-QC

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Language: R - Size: 110 KB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

pblumenkamp/GenExVis

An application for exploring and visualizing differential gene expression data created with DESeq2

Language: Vue - Size: 32.3 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 0

esharathgoud/Data-Analysis

linked with Bioinformatics analysis

Language: Shell - Size: 5.86 KB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

GwangWooKim/SBC-analysis

SBC analysis with DIGIST (In progress)

Language: R - Size: 10.8 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Language: R - Size: 18 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 3

rjstevick/NBayTNCoystersAnalysis

Scripts for analysis of metatranscriptomic and 16S rRNA amplicon data from wild oysters in Narragansett Bay

Language: R - Size: 21.8 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1

boehmv/SMG5-SMG7

Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity

Language: R - Size: 2.98 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

Zubair2021/16S_Microbiome_Analysis

This repository provides scripts for the 16S microbiome analysis and metagenome prediction using linux and R-Studio

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hbctraining/Intro-to-R-with-DGE 📦

Language: R - Size: 39.5 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 54 - Forks: 43

furkanmtorun/rna-seq-workflow 📦

🛠 under active development | RNA-Seq Workflow in Jupyter Notebook

Language: Jupyter Notebook - Size: 30.3 KB - Last synced at: over 2 years ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

kpatel427/DE_analysis

Scripts to run differential expression analysis using DESeq2 package

Language: R - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 2

mikelove/deseq2_or_edger

DESeq2 or edgeR

Language: R - Size: 513 KB - Last synced at: about 1 month ago - Pushed at: almost 9 years ago - Stars: 22 - Forks: 7

echille/Mcapitata_OA_Developmental_Gene_Expression_Timeseries

Developmental timeseries of the reef-building coral Montipora capitata under predicted low and extreme low ocean acidification scenarios

Language: HTML - Size: 318 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 7 - Forks: 1

cemalley/scRNASeq-bulkRNASeq

single cell and bulk RNASeq analysis scripts

Language: HTML - Size: 327 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 9

Alruta/Kallisto-DESeq2_Pipeline

A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)

Size: 9.77 KB - Last synced at: over 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

markonyango/quasi-express

Language: JavaScript - Size: 3.98 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Fjeanneret/multiSight

:bar_chart: :clipboard: Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.

Language: R - Size: 3.64 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

bixBeta/DESeq2-shiny

A shiny application to perform differential gene expression analysis of count data using DESeq2. The app also allows unsupervised exploration of data using PCA and hierarchical clustering.

Language: R - Size: 1.91 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1

lasamo/epimed_internship

Rstudio files created during my internship at IAB. Internship supervised by Florent Chuffart.

Language: R - Size: 23 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

erinwitkop/apoptosis_data_pipeline

This repository houses the pipeline I coded to perform differential analysis of transcriptomes from two oyster species, C. gigas and C. virginica and isolate genes in the apoptosis pathway.

Language: R - Size: 59.7 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 3

kevincjnixon/autoDE

Automated DE analysis by DESeq2

Language: R - Size: 38.1 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

Sam-Koehler/USDA-ARS-fusarium-community

R workflows used to analyze microbial community sequence data

Language: R - Size: 205 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

svsuresh/rscripts

Repository miscellaneous R scripts including scripts for RNAseq analysis

Language: Jupyter Notebook - Size: 1.95 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

statonlab/Chestnut_DEanalysis

Differential expression analysis - Chestnut

Language: R - Size: 4.39 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

jjdevega/miscanthus_starch_rnaseq

Transcriptional differences between Miscanthus hybrids with contrasting starch and sucrose concentrations and biomass production

Language: HTML - Size: 42.9 MB - Last synced at: 9 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

rstats-tartu/simulate-rnaseq

Workflow to simulate an RNA-seq reads and perform DE-analysis

Language: Python - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

PF2-pasteur-fr/SARTools-Galaxy

Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)

Language: R - Size: 4.1 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Language: Shell - Size: 418 KB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 0

ARCLeeds/deseq2-windows-setup

Notes on setting up deseq2 on windows with anaconda

Language: R - Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0

EmoryIntegratedComputationalCore/SSU11755

Project files for the Differential Expression Analysis of RNASeq data for Weiping Cao

Language: R - Size: 35.7 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1

LieberInstitute/recountWorkshop2019

Workshop proposal for BioC2019 centered around the recount2 resource

Language: TeX - Size: 213 MB - Last synced at: 6 months ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

LieberInstitute/recountWorkshop

Package for the recount workshop for BioC2017

Language: HTML - Size: 259 MB - Last synced at: 3 months ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 1