GitHub topics: clusterprofiler
ycl6/GO-Enrichment-Analysis-Demo
Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output
Language: R - Size: 25.1 MB - Last synced at: 5 months ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 1
noriakis/cpbnplot
Bayesian network plot for the enrichment analysis results
Language: Jupyter Notebook - Size: 1.33 MB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
YuLab-SMU/biomedical-knowledge-mining-book
:books: Biomedical knowledge mining using GOSemSim and clusterProfiler
Language: TeX - Size: 240 MB - Last synced at: 11 months ago - Pushed at: almost 2 years ago - Stars: 66 - Forks: 27
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
Language: Jupyter Notebook - Size: 31.3 KB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
raymondkiu/R-scripts-graphing-statistics
My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq
Language: R - Size: 794 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 2
albertme0308/GSApp
GSApp Pathway Analysis
Language: HTML - Size: 10.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
