Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: reactome
geneontology/reactome-go-cams
A set of GO-CAMs built automatically from Reactome pathways.
Size: 101 MB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 1 - Forks: 0
dhimmel/pathways
A compilation of pathway gene sets
Language: Jupyter Notebook - Size: 2.38 MB - Last synced: about 1 month ago - Pushed: about 8 years ago - Stars: 2 - Forks: 3
moosa-r/rbioapi
rbioapi: User-Friendly R Interface to Biologic Web Services' API
Language: R - Size: 37.8 MB - Last synced: 5 days ago - Pushed: 2 months ago - Stars: 17 - Forks: 1
RichardMatzko/BioNexusSentinel
A research biochemical network explorer and genetic cytohistological encyclopedia.
Language: Python - Size: 19.3 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Language: Python - Size: 17.3 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 21 - Forks: 4
PathwayAnalysisPlatform/PathwayMatcher_Dev 📦
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Language: Java - Size: 1.72 GB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 6 - Forks: 1
kkmann/pwcuratr
Curate gene pathway clusters using functional interactions
Language: R - Size: 68.7 MB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0
aprezvykh/bioinformatics
some scripts to process transcriptomics and Chip-seq data
Language: R - Size: 183 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 1
arnaudporet/sbgn2sif
Converting SBGN encoded pathways to the SIF file format
Language: Python - Size: 185 KB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 2 - Forks: 2
pasculorente/fireworks-exporter Fork of reactome-pwp/fireworks-exporter 📦
Service to generate images of top level pathway view (the fireworks).
Language: Java - Size: 9.47 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
pasculorente/diagram-exporter-example
An example on how to use reactome Rest API
Language: Jupyter Notebook - Size: 2.91 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
pasculorente/diagram-exporter Fork of reactome-pwp/diagram-exporter 📦
Exporter of the diagram layout to different formats
Language: Java - Size: 10.5 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
decodebiology/geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Language: Perl - Size: 53.8 MB - Last synced: 6 months ago - Pushed: over 3 years ago - Stars: 20 - Forks: 8
Caleydo/pathfinder_graph_reactome
pathfinder http://reactome.org/ graph binding
Language: Python - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
Language: Jupyter Notebook - Size: 31.3 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
wikipathways/reactome2gpml-converter
Converts Reactome pathways to GPML format
Language: Java - Size: 16.1 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 2 - Forks: 5
bio2bel/reactome
Integration of pathway-related information from Reactome in BEL
Language: Python - Size: 1.21 MB - Last synced: 12 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1
linas/biome-distribution
Research into statistical distributions of genomes, proteomes and reactomes
Language: Scheme - Size: 14.2 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0
marinoandrea/stargate-x
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
Language: Python - Size: 67.8 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1
pratiklodha/graphql Fork of reactome/graphql
Google Summer Of Code 2020.
Size: 1.01 MB - Last synced: over 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
cannin/sbgn2sif Fork of arnaudporet/sbgn2sif
Converting SBGN-encoded pathways to the SIF file format
Language: Python - Size: 187 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 1
nursa-reactome/gsea-desktop Fork of GSEA-MSigDB/gsea-desktop
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.
Language: Java - Size: 13.2 MB - Last synced: over 1 year ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
