GitHub topics: multi-omics-integration
NPLinker/nplinker
A python framework for microbial natural products data mining by integrating genomics and metabolomics data
Language: Python - Size: 116 MB - Last synced at: 15 days ago - Pushed at: 16 days ago - Stars: 20 - Forks: 13
hannshu/stSCI
Joint analysis single-cell and spatial transcriptomics data with stSCI
Language: Python - Size: 9.22 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0
JiaGengChang/myevae-paper
Code repository for "MyeVAE: A multi-omics variational autoencoder for predicting mortality in newly diagnosed myeloma patients"
Language: Python - Size: 14.2 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
Aridoge13/Kabosu
ML based AI tool for personalised medicine utilising multi-omics data
Language: Jupyter Notebook - Size: 94.7 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
Lin-Xu-lab/COSMOS
COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This software harnesses a graph neural network algorithm to deliver cutting-edge solutions for analyzing biological data that encompasses various omics types within a spatial framework.
Language: Jupyter Notebook - Size: 4.85 MB - Last synced at: 24 days ago - Pushed at: 7 months ago - Stars: 7 - Forks: 0
cwieder/PathIntegrate
PathIntegrate Python package for pathway-based multi-omics data integration
Language: Jupyter Notebook - Size: 3.84 MB - Last synced at: 2 months ago - Pushed at: 7 months ago - Stars: 16 - Forks: 1
JiaGengChang/fhr
Multi-omics integration for the classification of functional high risk patients in multiple myeloma.
Language: Jupyter Notebook - Size: 9.39 MB - Last synced at: 10 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
LamineTourelab/MOGONET
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Language: Jupyter Notebook - Size: 56.6 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 14 - Forks: 1
ylyu28/sspa-PARAFAC
Complete scripts used to produce the results of Imperial MRes Biomedical Research - Data Science 2024-2025 Project 1.
Language: Jupyter Notebook - Size: 0 Bytes - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
bastienchassagnol/bastienchassagnol
Personal portfolio enumerating my main omic analyses projects
Language: CSS - Size: 53.4 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
kris96tian/MOmics_thesis
COMPARISON OF MULTI-OMICS INTEGRATION METHODS
Language: HTML - Size: 148 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
cantinilab/Mowgli
Single-cell multi-omics integration using Optimal Transport
Language: Python - Size: 7.84 MB - Last synced at: 4 months ago - Pushed at: 9 months ago - Stars: 41 - Forks: 5
bshashikadze/diabetes-lung-omics-paper
Reproducibility repo for Shashikadze et al. "Multi-omics profiling of lungs from genetically diabetic pigs reveals reduced ALOX15 levels and impaired eicosanoid switching as mechanisms contributing to a proinflammatory milieu".
Language: Markdown - Size: 426 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
LamineTourelab/NetICS-multi-omics
NetICS: network-based integration of multi-omics data for prioritizing cancer genes
Language: MATLAB - Size: 12.8 MB - Last synced at: 16 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0