LungNoodle/lungsim

Pulmonary simulation library - Aether

Language: Fortran - Size: 1.89 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 42

kaftanski/fissure-segmentation

Keypoint-based Lung Fissure Segmentation with Geometric Deep Learning

Language: Python - Size: 1.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 1

mahdizynali/Decathlon-lung-tumor-segmentation

Decathlon lung tumor segmentation with segnet model

Language: Python - Size: 9.77 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

moucheng2017/EM-BPL-Semi-Seg

[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation

Language: Python - Size: 4.33 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 39 - Forks: 1

Torabiy/HLS-CMDS

Heart and Lung Sounds Dataset Recorded from a Clinical Manikin using Digital Stethoscope (HLS-CMDS)

Language: Jupyter Notebook - Size: 24.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

Genentech/topological_PRM_for_lungHRCT

Lung image analysis pipeline for topological PRM maps

Language: Python - Size: 182 KB - Last synced at: 22 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0

kaftanski/fissure-segmentation-IJCARS

Code for our article "Sparse Keypoint Segmentation of Lung Fissures: Efficient Geometric Deep Learning for Abstracting Volumetric Images"

Language: Python - Size: 64.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

wenyalintw/Nodule-CADx

Pulmonary nodules computer-aided diagnosis demo system.

Language: Python - Size: 18.6 MB - Last synced at: 16 days ago - Pushed at: over 4 years ago - Stars: 23 - Forks: 5

mrsaraei/cov19-data-analysis

Machine Learning for COVID-19 Data Analysis Project

Language: Python - Size: 1.38 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

mathilde733/RNA-seq

Project on RNA sequencing data

Language: HTML - Size: 7.41 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

LiquidFun/Airway

Automatic classification of tertiary bronchi based on bronchus masks using a rule-based approach.

Language: Python - Size: 15.6 MB - Last synced at: 6 days ago - Pushed at: over 2 years ago - Stars: 40 - Forks: 19

Projects-Developer/Lung-Cancer-Detection-Project

Final year Btech Lung-Cancer-Detection-Project with code and documents. Project Includes Source Code, PPT, Synopsis, Report, Documents, Base Research Paper & Video tutorials

Language: Python - Size: 4.88 KB - Last synced at: 4 days ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 0

ByteCommitter/WaveletUNet

Conducting Multilevel-Frequency analysis on UNet using FB2DEWT and pywdt components

Language: Jupyter Notebook - Size: 23.8 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 4 - Forks: 0

BMIRDS/deepslide

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

Language: Python - Size: 11.2 MB - Last synced at: 5 months ago - Pushed at: 11 months ago - Stars: 489 - Forks: 138

GeorgeBatch/LC25000-clean

[MICCAI'24 DEMI workshop] Evaluating Histopathology Foundation Models for Few-shot Tissue Clustering: an Application to LC25000 Augmented Dataset Cleaning

Language: Jupyter Notebook - Size: 3.78 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

AICAN-Research/DRU-Net

🫁 DRU-Net: Lung carcinoma Segmentation using multi-lens distortion and fusion refinement network

Language: Python - Size: 102 KB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 1

intel-comp-saude-ufes/2024-1-P2-classificador-cancer-de-pulmao

Segundo projeto apresentado na disciplina de Inteligência Computacional em Saúde utilizando a base de dados de imagens histopatológicas de câncer pulmonar.

Language: Jupyter Notebook - Size: 1.98 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

mlfm-knu/ThymomaSegmentation

3D CT thymic epithelial tumor segmentation

Language: Python - Size: 19.5 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

corsa-project/lung-patterns-analysis

Source code for pretraining models on the CheXpert dataset, for lung patterns analaysis - CORSA Project

Language: Jupyter Notebook - Size: 623 KB - Last synced at: 11 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jaeho3690/LIDC-IDRI-Preprocessing

This is the preprocessing step of the LIDC-IDRI dataset

Language: Jupyter Notebook - Size: 1.84 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 140 - Forks: 39

ahasanpour/lung_texture_classification_cnn

lung texture classification via deep learning

Language: Python - Size: 2 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1

abdel-habib/COPDgene-CT-registration

Registration of image sets and reference data of inspiratory and expiatory breath-hold CT image pairs acquired from the National Heart Lung Blood Institute COPDgene study archive. This project was developed for a course titled "Medical Image Registration and Applications" - MIRA under MAIA master program.

Language: Jupyter Notebook - Size: 117 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

magnumical/Online_Automatic_COVID_19_Diagnosing_system

Machine Learning approach to diagnose COVID-19 via X-Ray images

Language: CSS - Size: 55.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 3

m5b6/avatree-macos

Avatree version for ARM64 MacOS

Language: C++ - Size: 330 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

andreped/PLS-Net

Reimplementation of the PLS-Net architecture used for lung lobe segmentation in CT

Language: Python - Size: 417 KB - Last synced at: 8 days ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 2

Guoxuan99/Covid-Detection-Lung-Xrays

2021/2022 sem 1 - Image Processing Individual Assignment Project - Covid detection with Lung X-rays images - Detect Covid or other diseases based on Lung X-rays images by using transfer learning of CNN.

Language: Jupyter Notebook - Size: 489 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

healthcAIr/LuVoX

Workflow-centred open-source fully automated lung volumetry in chest CT.

Language: Python - Size: 1.4 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 2

RRafiee/NSCLC

Development and validation of a robust RNA-seq based prognostic signature in non-small cell lung cancer

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RRafiee/Bioconductor-GenomicDataCommons

Genomic Data Commons Query

Language: R - Size: 18 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

UndetectedGoods/Project7

Project7

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m7auveiguana416/Project7

Project7

Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

lave5nder5butterfly628/Project7

Project7

Size: 0 Bytes - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

5river57strider/Project7

Project7

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CelestialMariner23/UndFn

Undetected FN cheats

Size: 128 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

PulmonaryMRI/imoco_recon

iterative Motion Compensation (iMoCo) reconstruction for MRI. Includes both Matlab and Python implementations. reference doi 10.1002/mrm.27998

Language: MATLAB - Size: 583 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 5

frost15voyager/GoodsFnUnd1

GoodsFnUnd1

Size: 1.4 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

UCSDPulmonaryImaging/MBWSim

Matlab Simulation of a simple 2-compartment lung for exploring Scond effects

Language: MATLAB - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jamestrimble/lungexchange

Algorithms for finding optimal solutions for lung exchange

Language: Python - Size: 191 KB - Last synced at: over 1 year ago - Pushed at: almost 10 years ago - Stars: 1 - Forks: 1

dawn6explorer/FnYeah2

FnYeah

Size: 60.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

dawn6explorer/FnYeah3

FnYeah

Size: 29.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

dawn6explorer/FnYeah

FnYeah

Size: 28.3 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

aitoralmeida/COVID19_ultrasound_stratification

Language: Python - Size: 234 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

aitoralmeida/COVID19_ultrasound_stratification_mobile

Language: Java - Size: 374 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

breeze2seeker/1undermine14

1undermine14

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IsabellaSimmons-234/1undermine14

1undermine14

Size: 1000 Bytes - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 89 - Forks: 0

pzaffino/COVID19-intensity-labeling

Code for COVID19 CT labeling. Submillimetric CT dataset provided as well.

Language: Python - Size: 7.81 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 12 - Forks: 2

Open-Systems-Pharmacology/Lung-absorption-model

Pulmonary drug absorption implemented in MoBi (Eriksson et al. 2020)

Size: 1.75 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

PrathamLearnsToCode/Medical_Images_Pytorch

Computer Vision with PyTorch for Medical Image Analysis

Language: Jupyter Notebook - Size: 871 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bedead/lung-cancer-classification-yoloV8---gradio

The model is based on a YOLOv8 (Deep learning Neural network architecture) and is trained on the publicly available dataset, which consists of lung CT scans of patients with and without lung cancer.

Language: Jupyter Notebook - Size: 5.22 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

taznux/lung-image-analysis

A basic framework for pulmonary nodule detection and characterization in CT

Language: MATLAB - Size: 60.5 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 29 - Forks: 15

bshashikadze/diabetes-lung-omics-paper

Reproducibility repo for Shashikadze et al. "Multi-omics profiling of lungs from genetically diabetic pigs reveals reduced ALOX15 levels and impaired eicosanoid switching as mechanisms contributing to a proinflammatory milieu".

Language: Markdown - Size: 426 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

YeongHyeon/Lung_Extraction_from_CXR

Lung Extraction from Chest X-ray for Efficient Computing

Language: Python - Size: 3.54 MB - Last synced at: 17 days ago - Pushed at: almost 6 years ago - Stars: 14 - Forks: 3

junqiangchen/MedicalImageProcessExample

There are some examples of 3D Medical Image Process

Language: Python - Size: 123 KB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 36 - Forks: 7

junqiangchen/LungLobeSegmentation

Lobe Segmentation

Language: Python - Size: 2.55 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 25 - Forks: 14

EDRN/biomarker-database

An interactive index of biomarkers

Language: PHP - Size: 6.32 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

choilab-jefferson/LungCancerScreeningRadiomics

Lung cancer screening radiomics

Language: MATLAB - Size: 773 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 1

mastroalex/respiratory-mechanics

A linear model of lung mechanics is analyzed in the following report. The model corresponds to an RLC circuit with unknown parameters. Parametric identification allows to trace the system governance coefficients once a mathematical model has been estimated. Different approaches allow to minimize the difference between the estimated parameters and the real measures. An approach without numerical differentiation is addressed, using the Nelder-Mead algorithm and an approach using the relaxed Gauss-Newton method. Both methods lead to the correct estimation of the parameters but some considerations allow to optimize their performance.

Language: MATLAB - Size: 1.77 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

mastroalex/resp-mech-simulink

Pulmonary ventilation is a critical operation both during surgery and for assisted or replacement ventilation of the patient. This report proposes the analysis of a pulmonary mechanics model using an electrical analogy with an equivalent circuit consisting of resistors and capacitors. Such an electrical-mechanical analogy allows to analyze how the variation of lung parameters influences the ventilation in the case pressure-controlled ventilators and thus simulate the response of the pulmonary system to ventilation. A mathematical model is also proposed for the implementation of a fan controlled by pressure with square wave, within the Simulink modeling environment, with graphic interface and user-selectable parameters. Different pathological conditions are then simulated going to see how the variation of the lung compliance has the predominant effect. Small changes in the capacitance values are reflected in large variations in the volume of incoming air up to dangerous states for the patient himself.

Language: MATLAB - Size: 24.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 1

Layton-Lab/Immune-Circadian-Model

Source code for "Modeling the circadian regulation of the immune system: Sexually dimorphic effects of shift work".

Language: MATLAB - Size: 8.53 MB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

soroushtaslimi/lung_image_preprocessing

This repository uses preprocessing technics such as image growing and erosion and dilation to crop the lungs from chest X-ray images.

Language: Python - Size: 2.73 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

lasopablo/Covid_UltraSound

Lung Ultrasound - automatic detection of pathologies (COVID-19 and pneumonia).

Language: Jupyter Notebook - Size: 4.41 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 2

YeongHyeon/LungCT_Super_Resolution

Language: Python - Size: 660 KB - Last synced at: about 2 months ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0

sensynehealth/lung-ct-covid-pathology-detection

Early exploration of detecting signs of lung pathology in COVID-19 Lung CT cases

Language: Python - Size: 447 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

MattiaRigi97/Covid-Prediction-Lung-CT

A simple framework to detect the Covid-19 by analyzing the lung scans CT

Language: Jupyter Notebook - Size: 24.9 MB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 2

sayanmondal31/lungcure Fork of FlorianWoelki/lungcure

This is a WebApp, which detects lung diseases with integrated stripe payment processing.

Language: HTML - Size: 17.5 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

amaanabbasi/XTB-keras

Implemented a CNN in Keras, that is trained on Lung Xrays to predict whether a patient has TB or not

Language: Python - Size: 209 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

saichandrareddy1/Corona_Lung

This repository is about the COVID data and worked with CNN

Language: Jupyter Notebook - Size: 148 MB - Last synced at: 27 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ieee820/DeepEM-for-Weakly-Supervised-Detection-1 Fork of uci-cbcl/DeepEM-for-Weakly-Supervised-Detection-1

MICCAI18 DeepEM: Deep 3D ConvNets with EM for Weakly Supervised Pulmonary Nodule Detection

Language: Jupyter Notebook - Size: 3.26 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

ieee820/DeepLung-1 Fork of wentaozhu/DeepLung

WACV18 paper "DeepLung: Deep 3D Dual Path Nets for Automated Pulmonary Nodule Detection and Classification"

Language: Python - Size: 258 MB - Last synced at: almost 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0