REMEX-Lab/REMEX-Lab.github.io

REMEX Lab's home page.

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mahmoodlab/CONCH

A vision-language foundation model for computational pathology - Nature Medicine

Language: Python - Size: 1.2 MB - Last synced: 4 days ago - Pushed: about 2 months ago - Stars: 152 - Forks: 10

computationalpathologygroup/pythostitcher

Python tool for stitching histopathology tissue fragments into artificial whole-mounts.

Language: Python - Size: 197 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 12 - Forks: 5

Dana-Farber-AIOS/pathml

Tools for computational pathology

Language: Python - Size: 218 MB - Last synced: 4 days ago - Pushed: 6 days ago - Stars: 365 - Forks: 79

mahmoodlab/CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Language: Python - Size: 45.8 MB - Last synced: 4 days ago - Pushed: 27 days ago - Stars: 912 - Forks: 318

mahmoodlab/UNI

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Language: Jupyter Notebook - Size: 5.79 MB - Last synced: 4 days ago - Pushed: about 2 months ago - Stars: 191 - Forks: 25

Richarizardd/Self-Supervised-ViT-Path

Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)

Language: Jupyter Notebook - Size: 39.6 MB - Last synced: 4 days ago - Pushed: almost 2 years ago - Stars: 126 - Forks: 17

EIDOSLAB/UNITOPATHO

Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198

Language: Jupyter Notebook - Size: 3.18 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 27 - Forks: 5

mahmoodlab/HIPT

Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

Language: Jupyter Notebook - Size: 740 MB - Last synced: 4 days ago - Pushed: 2 months ago - Stars: 465 - Forks: 83

TissueImageAnalytics/tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Language: Python - Size: 524 MB - Last synced: 4 days ago - Pushed: 9 days ago - Stars: 327 - Forks: 71

EIDOSLAB/torchstain

Stain normalization tools for histological analysis and computational pathology

Language: Python - Size: 2.48 MB - Last synced: 6 days ago - Pushed: about 2 months ago - Stars: 102 - Forks: 22

DIAGNijmegen/pathology-whole-slide-data

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

Language: Python - Size: 93.6 MB - Last synced: 4 days ago - Pushed: 2 months ago - Stars: 81 - Forks: 24

MECLabTUDA/HARP

Repository for Histopathological Artifact Restoration Pipeline

Language: Python - Size: 50 MB - Last synced: 11 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

jamesdolezal/slideflow

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

Language: Python - Size: 121 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 220 - Forks: 34

mahmoodlab/Patch-GCN

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

Language: Python - Size: 1.16 GB - Last synced: 4 days ago - Pushed: 13 days ago - Stars: 103 - Forks: 29

SBU-BMI/champkit

Benchmarking toolkit for patch-based histopathology image classification.

Language: Python - Size: 153 KB - Last synced: 4 days ago - Pushed: 12 months ago - Stars: 37 - Forks: 3

Lewislou/SENUCLS

This is the official PyTorch implementation of Structure Embedded Nucleus Classification for Histopathology Images

Language: Python - Size: 482 KB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 6 - Forks: 1

4m4n5/NASDM

Pytorch implementation of NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Models

Language: Jupyter Notebook - Size: 413 MB - Last synced: 17 days ago - Pushed: 17 days ago - Stars: 14 - Forks: 2

AdalbertoCq/Pathology-GAN

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'

Language: Python - Size: 547 MB - Last synced: 5 days ago - Pushed: almost 3 years ago - Stars: 90 - Forks: 20

SBU-BMI/wsinfer-mil

CLI tool to run specimen-level inference on whole slide images

Language: Python - Size: 39.1 KB - Last synced: 19 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

mahmoodlab/TOAD

AI-based pathology predicts origins for cancers of unknown primary - Nature

Language: Python - Size: 2.79 MB - Last synced: 18 days ago - Pushed: over 2 years ago - Stars: 167 - Forks: 44

maduc7/Histopathology-Datasets

Ressources of histopathology datasets

Size: 81.1 KB - Last synced: 27 days ago - Pushed: 27 days ago - Stars: 142 - Forks: 19

ChongQingNoSubway/PDL

Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "

Language: Python - Size: 1.44 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 111 - Forks: 29

MarvinLer/tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Language: Python - Size: 63.1 MB - Last synced: 4 days ago - Pushed: almost 3 years ago - Stars: 113 - Forks: 34

MWod/DeeperHistReg

DeeperHistReg - Source Code

Language: Jupyter Notebook - Size: 11.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0

AdalbertoCq/Histomorphological-Phenotype-Learning

Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Quesne J.*, Tsirigos A.*, and Yuan K.* Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides. 2024'

Language: Python - Size: 82.5 MB - Last synced: 4 days ago - Pushed: about 1 month ago - Stars: 24 - Forks: 6

open-pathology/awesome-pathology

Awesome List of Digital and Computational Pathology Resources

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AdalbertoCq/Learning-a-low-dimensional-manifold-of-realcancer-tissue

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Learning a low dimensional manifold of real cancer tissue with PathologyGAN 2020'.

Language: Python - Size: 50.4 MB - Last synced: 5 days ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1

wisdomikezogwo/quilt1m

[NeurIPS 2023 Oral] Quilt-1M: One Million Image-Text Pairs for Histopathology.

Language: Python - Size: 1.08 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 110 - Forks: 9

dazhangyu123/ACMIL

WSI classification

Language: Python - Size: 4.64 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 21 - Forks: 2

AdalbertoCq/Adversarial-learning-of-cancer-tissue-representations

Corresponding code of 'Quiros, A. C., Coudray, N., Yeaton, A., Sunhem, W., Murray-Smith, R., Tsirigos, A., Yuan, K. Adversarial learning of cancer tissue representations. The 24th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2021'

Language: Python - Size: 53.4 MB - Last synced: 5 days ago - Pushed: almost 2 years ago - Stars: 15 - Forks: 4

srinidhiPY/SSL_CR_Histo

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

Language: Python - Size: 8.69 MB - Last synced: 4 days ago - Pushed: about 2 years ago - Stars: 62 - Forks: 21

pathologyatlas/template

template for pathology atlas repositories

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binli123/dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

Language: Python - Size: 48.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 302 - Forks: 82

sebastianffx/stainlib

Python 3 library for the augmentation & normalization of H&E images

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DeepMicroscopy/Cox_AMIL

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"

Language: Jupyter Notebook - Size: 60.1 MB - Last synced: 13 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 3

francisanokye/PANDA-Challenge

Language: Jupyter Notebook - Size: 427 KB - Last synced: 2 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

lely475/ocelot23algo

Approach that won 3rd place in the OCELOT 2023 Challenge. Multi-organ H&E-based deep learning model for cell detection, applicable for tumor cellularity/ purity/ content estimation.

Language: Python - Size: 4.18 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 6 - Forks: 0

manuel-munoz-aguirre/PyHIST

A pipeline to segment tissue from the background in histological images

Language: Python - Size: 55.2 MB - Last synced: 4 days ago - Pushed: about 1 year ago - Stars: 55 - Forks: 13

uw-loci/collagen-fiber-metrics

Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

Language: Jupyter Notebook - Size: 34.9 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 0

NeelKanwal/Equipping-Computational-Pathology-Systems-with-Artifact-Processing-Pipeline

computational-pathology-pipeline

Language: Python - Size: 186 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

AmayaGS/WSI_Segmentation

Automated segmentation of H&E and Immunohistochemistry stained synovial tissue in histopathology Whole Slide Images - MIUA 2023

Language: Python - Size: 3.08 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

AmayaGS/MUSTANG

Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023

Language: Python - Size: 2.58 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 11 - Forks: 2

MahtabRanjbar/Histo_classification-with-DeepViT

This project leverages the DeepVit model, a variant of the Vision Transformer (ViT), for the classification of histopathology images from the BreakHis dataset.

Language: Python - Size: 85 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

awiloQMH/CancerReportingTemplate

CAP cancer reporting templates

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AICAN-Research/breast-epithelium-segmentation

🌸 Breast epithelium segmentation through IHC-guided supervision

Language: Python - Size: 405 KB - Last synced: 6 days ago - Pushed: about 1 month ago - Stars: 9 - Forks: 3

andreped/FP-DSA-plugin

Digital Slide Archive plugin to enable FAST deployment of pretrained CNNs for digital pathology

Language: Python - Size: 6.77 MB - Last synced: 6 days ago - Pushed: 6 months ago - Stars: 5 - Forks: 1

ajinkya-kulkarni/PySpatialHistologyAnalysis

Package using StarDist and Python that performs object detection and spatial analysis on H&E images

Language: Python - Size: 209 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

mdsatria/npc_digital_tils

Code for identifying TILs in H&E images as described in paper: AI-Based Risk Score from Tumour-Infiltrating Lymphocyte Predicts Locoregional-Free Survival in Nasopharyngeal Carcinoma

Language: Jupyter Notebook - Size: 11.1 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

nauyan/NC-Net

Nuclei Instance Segmentation Pipeline for Histopathology Datasets

Language: Python - Size: 29.3 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 6 - Forks: 0

rashindrie/ANSAC

Classification of whole-slide images based on tumor infiltrating lymphocyte grades using image-level labels

Language: Python - Size: 354 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

DIAGNijmegen/pathology-he-auto-augment

H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

Language: Python - Size: 7.47 MB - Last synced: 6 months ago - Pushed: 11 months ago - Stars: 49 - Forks: 6

Shuyib/cell-explorer-tool

An image explorer tool that uses ipywidgets and image manipulation in Pillow to look for and refine features in a image. This is mostly pitched on cell biology, cytopathology and histopathology.

Language: Jupyter Notebook - Size: 729 KB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 4 - Forks: 1

jurgenizer/slidedb 📦

A virtual slide viewer (virtual microscope) for extremely high-resolution histopathology images. Made with Python, Flask and Leaflet.

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NeelKanwal/Quantifying-the-effect-of-color-processing-on-blood-and-damaged-tissue-detection

Source code for paper: https://ieeexplore.ieee.org/abstract/document/9816283

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lyhkevin/Graph-V-Net

A Hierarchical Graph V-Net with Semi-supervised Pre-training for Breast Cancer Histology Image Classification" (IEEE TMI)

Language: Python - Size: 10.4 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 9 - Forks: 2

rshwndsz/histovision

Benchmarks for the segmentation of H&E stained histopathology images

Language: Python - Size: 157 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

alperaksac/cactus

CACTUS: Cancer Image Annotating, Calibrating, Testing, Understanding and Sharing

Language: JavaScript - Size: 502 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

c-arthurs/ProstSegNet

Keras unet and then chromogen analysis for prostate histopathology images.

Language: Python - Size: 9.77 KB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

ace19-dev/Histopathologic-Cancer-Detection

Kaggle Competition: Identify metastatic tissue in histopathologic scans of lymph node sections

Language: Python - Size: 1.4 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 1

FabianHeinemann/Deep_learning_for_liver_NAS_and_fibrosis_scoring

Repository for the publication "Deep learning enables pathologist-like scoring of NASH models"

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mahmoodlab/PathomicFusion

Fusing Histology and Genomics via Deep Learning - IEEE TMI

Language: Jupyter Notebook - Size: 42.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 222 - Forks: 71

JerryWeiAI/DifficultyTranslation

Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.

Language: Python - Size: 67.4 KB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

mahmoodlab/NucleiSegmentation

cGAN-based Multi Organ Nuclei Segmentation

Language: Python - Size: 824 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 173 - Forks: 70

YashSharma/C2C

Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.

Language: Python - Size: 2.27 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 51 - Forks: 12

jonasd4/pathology-worked-through

This is the code for the first worked-through example: Cancer classification from images in our paper Explainable AI for Precision Pathology. We will train a model to classify different colorectal patches into tissue classes.

Language: Jupyter Notebook - Size: 1.74 MB - Last synced: 8 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

PaulNSchofield/mpath

Automatically exported from code.google.com/p/mpath

Language: Shell - Size: 468 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 2

daangeijs/pathology-cell-density

A demonstration script for analyzing cell density in whole slide images (WSIs). This repository accompanies the article published on daangeijs.nl. The demo showcases how to compute cell density in detected tumor regions using WholeSlideData and GeoPandas.

Language: Jupyter Notebook - Size: 558 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

komzy/Gaze-Based-Histopathology

Script Release, Training and Evaluation Pipeline

Language: Jupyter Notebook - Size: 27.8 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

patolojiatlasi/patolojiatlasi.github.io

Patoloji Atlası

Language: HTML - Size: 710 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 2

kirill-menke/medical-wsss-paper-notes

Overview and short reviews of papers in WSSS for histopathological image

Size: 3.26 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

ComplexOrganizationOfLivingMatter/NeuroblastomeIntegration

"The topology of vitronectin: A complementary feature for neuroblastoma risk classification based on computer‐aided detection" by Vicente-Munuera et al.

Language: MATLAB - Size: 433 KB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 0

pathologyatlas/tubularadenoma

tubular adenoma

Language: JavaScript - Size: 296 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

tand826/wsiprocess

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

Language: Python - Size: 10.5 MB - Last synced: 8 months ago - Pushed: 9 months ago - Stars: 16 - Forks: 3

oeminaga/PlexusNet

PlexusNet for medical imaging

Language: Python - Size: 303 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 4 - Forks: 2

histopathologyatlas/histopathologyatlas.github.io

Histopathology Atlas contains whole slide images of various diseases

Language: HTML - Size: 216 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

stegmuel/ScoreNet

Official implementation of "ScoreNet: Learning Non-Uniform Attention and Augmentation for Transformer-Based Histopathological Image Classification".

Language: Python - Size: 37.1 KB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 3

mahmoodlab/SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

Language: Python - Size: 958 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 72 - Forks: 22

bianhao123/Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

Language: Python - Size: 628 KB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 42 - Forks: 11

compbio-ai/openslide-bundle

A python package bundling the openslide C and python libraries for automated path management

Language: JavaScript - Size: 23.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

soumitri2001/DMTNet-CRCH

Official Implementation of our paper "Supervision meets Self-Supervision: A Deep Multitask Network for Colorectal Cancer Histopathological Analysis" [Best Paper Award at MISP 2022]

Language: Python - Size: 46.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 6 - Forks: 1

patolojiatlasi/EN

Pathology Atlas (English version of Patoloji Atlası)

Language: HTML - Size: 367 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

Zhengyushan/kat

The code for Kernel attention transformer (KAT)

Language: Python - Size: 278 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 19 - Forks: 1

uw-loci/demo_wsi_superres

WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.

Language: Python - Size: 9.61 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 15 - Forks: 4

Valderas7/BreastCarcinomaProject

Repositorio para el proyecto con código PI-0032-2017, cuyo objetivo es la predicción de metástasis a distancia, de supervivencia, de recidivas y de mutaciones de genes que se producen con el carcinoma de mama mediante el uso de datos clínicos, inmunohistoquímicos e imágenes de diagnóstico.

Language: Python - Size: 1.18 GB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

LouisStefanuto/Detection-of-the-PIK3CA-mutation-in-breast-cancer

Data challenge by Owkin (2023).

Language: Jupyter Notebook - Size: 1.3 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

lucasrla/wsi-tile-cleanup

Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning

Language: Python - Size: 3.6 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 13 - Forks: 3

CBICA/OPM 📦

OpenSlide Patch Manager

Language: Python - Size: 192 MB - Last synced: 12 days ago - Pushed: over 1 year ago - Stars: 4 - Forks: 6

IAmS4n/HEROHE

Implementation of Piaze Team for HEROHE challenge

Language: Python - Size: 14.1 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

lucasrla/wsi-preprocessing

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

Language: Python - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 25 - Forks: 6

abbvie-external/torchunmix

Automatic stain unmixing and augmentation for histopathology images in PyTorch

Language: Python - Size: 1.64 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

uw-loci/gnn-pccp

Graph neural networks for PDAC vs CP in histology

Language: Jupyter Notebook - Size: 2.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

m-mohsin-zafar/tdc-lc

Official Repository for "Detection of tumour infiltrating lymphocytes in CD3 and CD8 stained histopathological images using a two-phase deep CNN"

Language: Python - Size: 13.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 0

ambideXtrous9/Histopathologic-Cancer-Detection

Histopathologic Cancer Detection

Language: Jupyter Notebook - Size: 715 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

YashSharma/MaNi

Implementation of MaNi: Maximizing Mutual Information for Nuclei Cross-Domain Unsupervised Segmentation

Language: Python - Size: 2.17 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 6 - Forks: 3

koriavinash1/DigitalHistoPath

Language: Jupyter Notebook - Size: 373 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 23 - Forks: 9

lucasrla/wsi-preprocessing-sos-workflow

A pipeline to preprocess whole-slide images (WSI) towards deep learning

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

bghojogh/Siamese-Network-Histopathology

The code for the paper "Supervision and Source Domain Impact on Representation Learning: A Histopathology Case Study"

Language: Python - Size: 8.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 1

YashSharma/HistoTransfer

Implementation of HistoTransfer published in IEEE-BHI 2021.

Language: Jupyter Notebook - Size: 8.56 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 3

tahirjhan/HHFA_Net_Colorectal_Cancer

Code and trained models for the paper "Artificial intelligence-based tissue phenotyping in colorectal cancer histopathology images."

Language: Python - Size: 1.59 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0