GitHub topics: wsi-images
MercaderLabAnatomy/T-MIDAS
Automated batch processing for tissue microscopy image data
Language: Cool - Size: 35.9 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 6 - Forks: 1
mahmoodlab/TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
Language: Python - Size: 2.79 MB - Last synced at: about 8 hours ago - Pushed at: over 3 years ago - Stars: 173 - Forks: 51
AImageLab-zip/MONKEY_challenge_ziplab
AImageLab Zip UNIMORE solution for the MONKEY Challenge of Radboud University Medical Center
Language: Jupyter Notebook - Size: 336 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0
mahmoodlab/Patch-GCN
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Language: Python - Size: 1.16 GB - Last synced at: 22 days ago - Pushed at: about 1 year ago - Stars: 148 - Forks: 28
MWod/DeeperHistReg
DeeperHistReg - Source Code
Language: Jupyter Notebook - Size: 11.1 MB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 57 - Forks: 7
mahmoodlab/SISH
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Language: Python - Size: 963 KB - Last synced at: 29 days ago - Pushed at: almost 2 years ago - Stars: 102 - Forks: 27
315386775/OpenPathoFoundation
收集和梳理病理AI大模型相关
Size: 229 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0
julimer228/EPIIC
Edge-Preserving Method Increasing nucleI Clarity for Compression Artifacts Removal in Whole-Slide Histopathological Images
Language: MATLAB - Size: 14.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
mahmoodlab/PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Language: Jupyter Notebook - Size: 194 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 204 - Forks: 38
cechlauren/DeeeepLearning
Repository of code for deep learning approaches on WSIs, IHC, H&E, etc.
Language: Groovy - Size: 1.16 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
niloynew/DICOM-and-Whole-Slide-Image-Co-registration
This repository is to showcase my experience in the field of medical visualization as a research assistant under the supervision of Prof. Dr. Sylvia Saalfeld.
Language: Jupyter Notebook - Size: 233 KB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mikeyg42/Tools_histology_images
Repository of MATLAB implemented image processing tools
Language: MATLAB - Size: 276 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
liupei101/DSCA
[ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis
Language: Python - Size: 6.21 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 5
hwanglab/HE_IHC_HN_analysis
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
Language: Jupyter Notebook - Size: 4.21 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 1
dmandache/sleek-patch
Python 3 Package for optimally sampling big images with texture-aware patchification based on SLIC superpixels. So Sleek !
Language: Python - Size: 30.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0
c-arthurs/ProstSegNet
Keras unet and then chromogen analysis for prostate histopathology images.
Language: Python - Size: 9.77 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
julimer228/ArtifactsRemovalCode
The edge-preserving JPEG compression artifact removal algorithm implementation. The algorithm is designed to remove artifacts from H&E stained medical images. Work in progress.
Language: MATLAB - Size: 49.3 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 1
acuaroo/Mitotic-Indexer
Given an image of cells from a WSI, identify the mitotic figures and return a mitotic index.
Language: Python - Size: 3.98 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0
Zhengyushan/kat
The code for Kernel attention transformer (KAT)
Language: Python - Size: 278 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 19 - Forks: 1
Valderas7/BreastCarcinomaProject
Repositorio para el proyecto con código PI-0032-2017, cuyo objetivo es la predicción de metástasis a distancia, de supervivencia, de recidivas y de mutaciones de genes que se producen con el carcinoma de mama mediante el uso de datos clínicos, inmunohistoquímicos e imágenes de diagnóstico.
Language: Python - Size: 1.18 GB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
bupt-ai-cz/BALNMP
Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides, BCNB Dataset
Language: Python - Size: 175 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 39 - Forks: 6
PhilipChicco/MICCAI2020mil
MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"
Language: Python - Size: 809 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 11
bupt-ai-cz/Breast-Cancer-Image-Classification-On-WSI-With-Spatial-Correlations Fork of dong100136/Breast-Cancer-Image-Classification-On-WSI-With-Spatial-Correlations
Breast Cancer Image Classification On WSI With Spatial Correlations https://teacher.bupt.edu.cn/zhuchuang/en/index.htm
Language: Python - Size: 51.8 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 10 - Forks: 1
uzunb/deep-zoom-image-viewer
This is a viewer app that provides using to zoom and pan tools Deep Zoom Image (dzi) or Whole Slide Image (wsi) using Electron JS and OpenSeaDragon .
Language: JavaScript - Size: 32.8 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
bupt-ai-cz/Hybrid-Model-Enabling-Highly-Efficient-Follicular-Segmentation Fork of AliceTao/Hybrid-Model-Enabling-Highly-Efficient-Follicular-Segmentation
https://teacher.bupt.edu.cn/zhuchuang/en/index.htm
Language: Python - Size: 22.6 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 0
Ala-Eddine-BOUDEMIA/Lung-Cancer-Diagnosis
Diagnosis of histologic growth patterns of lung cancer in digital slides using deep learning.
Language: Python - Size: 751 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 2
brian220/SvsScanner
Use the openslide Library to process the WSI image
Language: Python - Size: 30.3 KB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0
IAmS4n/TensorBoard_Plugin_WSI
A plugin for TensorBoard to show WSI images. The plugin is based on Deep Zoom Image (DZI).
Language: JavaScript - Size: 1.26 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
ChinmayLad/Semantic-Segmentation-using-Multiscale-L1-Loss
A GAN approach for improving segmentation of WSI Images.
Language: Jupyter Notebook - Size: 11.7 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 1
