pipparichter/frugal

Finding and Removing Unreliable Genes

Language: Jupyter Notebook - Size: 68.2 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

soedinglab/metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Language: C - Size: 14.1 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 183 - Forks: 23

wurmlab/flo

Same species annotation lift over pipeline.

Language: Ruby - Size: 4.45 MB - Last synced at: 26 days ago - Pushed at: almost 2 years ago - Stars: 97 - Forks: 28

wurmlab/genevalidator

GeneValidator: Identify problems with predicted genes

Language: Ruby - Size: 130 MB - Last synced at: 29 days ago - Pushed at: about 1 year ago - Stars: 46 - Forks: 18

rcac-bioinformatics/genome-annotation

Genome Annotation: Hands-on Training

Language: R - Size: 7.58 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0

unipept/FragGeneScanRs

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

Language: Rust - Size: 15.3 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 26 - Forks: 1

zhukovanadezhda/gene-prediction

🔬🚀Prokaryotic gene prediction using Shine-Dalgarno motif and reading frame detection🧬🦠

Language: Python - Size: 1.89 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

nagshivank/Microbial-Genomic-Analysis

A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features in microbial genomes.

Language: Shell - Size: 367 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

sjaenick/pprodigal

Python3 wrapper for parallelized gene prediction using Prodigal

Language: Python - Size: 16.6 KB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 8 - Forks: 3

pentalpha/rna_gatherer_2020 📦

ncRNA identification, annotation and functional prediction

Language: Python - Size: 117 MB - Last synced at: 10 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

Orpowell/SABAT

A toolkit for identifying gene homologs in closely related species.

Language: Python - Size: 67.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

guigolab/geneidx

Nextflow pipeline for genome annotation of protein-coding genes

Language: Nextflow - Size: 202 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 15 - Forks: 2

raktim-mondol/hist2RNA

Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

Language: Python - Size: 8.86 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

AstraBert/PredGenesGetPepts

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

Language: Shell - Size: 121 KB - Last synced at: about 21 hours ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

hemantdhankar/Gene-Prediction-Meta-Server

Gene Prediction Meta Server is a project that aims to bring multiple offline gene prediction tools online and integrating them into a single online platform in a user-friendly way. The related video link is attached.

Language: C - Size: 18.3 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0

guyleonard/gene_prediction_pipeline

Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS

Language: Shell - Size: 58.6 KB - Last synced at: over 1 year ago - Pushed at: almost 8 years ago - Stars: 8 - Forks: 1

schellt/busco2snap

Create a SNAP model from BUSCO output

Language: Perl - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

isaurabhkr/PluriTool

Cpp Programs for feature extraction

Language: C++ - Size: 7.4 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 2

juliawiggeshoff/AugusMake

The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

Language: Python - Size: 136 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Poissonfish/iPat

iPat allows you to perform GWAS and GS with drags and clicks!

Language: Java - Size: 128 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 10 - Forks: 2

Valderas7/BreastCarcinomaProject

Repositorio para el proyecto con código PI-0032-2017, cuyo objetivo es la predicción de metástasis a distancia, de supervivencia, de recidivas y de mutaciones de genes que se producen con el carcinoma de mama mediante el uso de datos clínicos, inmunohistoquímicos e imágenes de diagnóstico.

Language: Python - Size: 1.18 GB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

unipept/FragGeneScanPlusPlus Fork of hallamlab/FragGeneScanPlus 📦

Scalable high-throughput short-read open reading frame prediction

Language: C - Size: 13.1 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 7 - Forks: 3

AxelGiottonini/EMBLish 📦

EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

Language: Python - Size: 4.78 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

lvn3668/genemark

Size: 6.84 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

bpucker/yam

scripts associated with yam genome assembly

Language: Python - Size: 69.3 KB - Last synced at: 9 months ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 0

inspirewind/SAGApipeline

Language: Python - Size: 151 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

wurmlab/afra

Genome Annotation for the Masses

Language: JavaScript - Size: 39.2 MB - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 36 - Forks: 21

rbr7/compgenomics2021

Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.

Language: AMPL - Size: 48.8 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jaotheboss/Gene-Annotation-and-Prediction

This project deals with predicting the location of a gene in the human genome based off experimental data

Language: Python - Size: 11.2 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

rcs333/NovelVirusSeq

Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products

Language: Python - Size: 5.86 KB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 0

heather-han/cancer-gene-prediction

Prediction of metastasis sites for breast cancer cells

Language: Python - Size: 27.7 MB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 1

ccdmb/panann Fork of darcyabjones/panann

Pipelines for gene and TE annotation of pangenomes.

Language: Dockerfile - Size: 33.2 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

dnanto/glimmerize

automatically create GLIMMER training materials from GenBank records

Language: Python - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0