ablab/spades

SPAdes Genome Assembler

Language: C++ - Size: 97 MB - Last synced: about 18 hours ago - Pushed: about 19 hours ago - Stars: 677 - Forks: 131

LiaOb21/colora

A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.

Language: Python - Size: 479 KB - Last synced: about 20 hours ago - Pushed: about 24 hours ago - Stars: 4 - Forks: 1

PalMuc/2Tethya_genomes

The genome of the contractile demosponge Tethya wilhelma

Language: HTML - Size: 471 MB - Last synced: about 10 hours ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

gauravcodepro/miniprot-protein-annotator

from protein alignments to deep learning preparatory.

Language: Python - Size: 74.2 KB - Last synced: about 10 hours ago - Pushed: 1 day ago - Stars: 0 - Forks: 0

sanger-tol/treeval

Pipelines for the production of Treeval data

Language: Nextflow - Size: 48.8 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 17 - Forks: 2

justin-tpb/Vampyrellida-genomics

Scripts and data regarding Vampyrellida genomics.

Language: Shell - Size: 35.2 KB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 0 - Forks: 0

gauravcodepro/pacbiohifi-analyzer

a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments

Language: Ruby - Size: 1.76 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

neherlab/pangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

Language: Julia - Size: 35 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 75 - Forks: 6

malonge/RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language: Python - Size: 278 KB - Last synced: 1 day ago - Pushed: 3 months ago - Stars: 435 - Forks: 43

Nextomics/NextDenovo

Fast and accurate de novo assembler for long reads

Language: C - Size: 13.7 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 339 - Forks: 52

nf-core/bacass

Simple bacterial assembly and annotation pipeline

Language: Nextflow - Size: 4.69 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 51 - Forks: 35

nf-core/genomeannotator

Pipeline for the identification of (coding) gene structures in draft genomes.

Language: Nextflow - Size: 97 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 15 - Forks: 11

shliamin/Python-Genome-Assembler

This repository contains a Python-based genome assembler designed to perform k-mer spectrum-based error correction and generate SAM files for visualizing genome mappings. It supports genomic data analysis with a focus on identifying mutations relevant to antibiotic resistance.

Language: Python - Size: 542 KB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 0 - Forks: 0

gauravcodepro/pacbiohifi-universitat-potsdam

a slurm configuration analytical pipline for the analysis of the pacbiohifi sequencing genomes using the verkko, hifiasm and the genomeasm4pg. only provide the link to the sequencing or the files with the folder and rest it will do the work

Language: Shell - Size: 15.6 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/gawk-awk-paf-alignments

a combination of the gawk and the awk basic compiler to create a function that will estimate the aligned genome fractions from the paf alignment of the genome long reads to the genome. This includes multiple functions which also allow for the filtering of the quality alignments before estimating the genome length coverage.

Language: Awk - Size: 545 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

wzuhou/Genome_assembly_annotation

Scripts and pipeine for Genome_assembly_annotation

Language: R - Size: 108 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 7 - Forks: 2

bcgsc/goldrush

Linear-time de novo Long Read Assembler

Language: C++ - Size: 4.24 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 30 - Forks: 1

Swart-lab/loxodes-bleties-workflow

Language: Jupyter Notebook - Size: 366 KB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 0 - Forks: 0

jts/nanopolish

Signal-level algorithms for MinION data

Language: C++ - Size: 58.2 MB - Last synced: 2 days ago - Pushed: 9 months ago - Stars: 542 - Forks: 160

RolandFaure/GenomeTailor

Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly

Language: C++ - Size: 16.4 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 2 - Forks: 0

gauravcodepro/awk-pacbiohifi

awk simulators for the pacbiohifi assembly reading from the graphs. easy to use awk for the coverage and the length files. udpating later on with the complete awk functionalities for the compilation into the direct kernels.

Language: Awk - Size: 605 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/genome-size-estimation

a genome reference estimation based on the peak size calibration and the given the values of the peak size calibration will estimate the genome and the sub genome fraction.

Language: Python - Size: 6.84 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 1 - Forks: 0

gauravcodepro/illumina-genome-size

estimation of the genome size for the illumina reads, only for the pre-screening purposes and includes a R function also.

Language: Shell - Size: 33.2 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/genomehifi-contiguity

a conda yaml for the genomehifi-contiguity that will allow you to create the environment for all the analysis.

Size: 5.86 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/genome-annotation-visualizer

a R function part to visualizae the genes coming from the genome alignment proteome annotations. This is a part of the evoseq R package

Language: R - Size: 37.1 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/arabidopsis-api-tair

this repository contains a function which will make your access to tair datasets easier for the arabidopsis research. Run this function and it will run and download the arabidopsis datasets and make the required analysis. It will make all the dictionary with nested lists and tuples which will provide a easy access to the tair dataframe

Language: Python - Size: 10.4 MB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/tair-gff-ids

A set of functions which will provide easy access and cleaned gff from tair and uses a dataframe and datascience approach to get the systematic tair ids and their coordinates from the tair 10 gff version. It can be applied to any version of the tair for getting the systematic retrival of the tair ids.

Language: Python - Size: 4.69 MB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/miniprot-compleasm

a list of the awk expression that can be used for the preparation of the single and the duplicated genes across the reference genome mapping using the reference protein datasets

Language: Awk - Size: 26.4 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/miseq-nextseq-novaseq-genome

shell assembler that takes only the directory path and does all the cleaning of the reads, mapping, remapping and assembly. From start to finish everything by providing a simple directory path.

Language: Shell - Size: 27.3 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

gauravcodepro/genomic-alignment-extraction

A scalable large scale genomic fraction aligner and extractor for the large scale alignment of the genomes and the transcriptomes and process them over the cores for the extraction of the aligned regions. The aligned regions can also be mapped to the length plotter and can be machine trained for specific applications

Language: Python - Size: 72.3 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 1 - Forks: 0

gauravcodepro/trinity-blast-machine-learning

a scalable and faster implementation for the genome and the transcriptome annotations for large scale sequencing datasets.

Language: Python - Size: 48.8 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

Adamtaranto/teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

Language: Python - Size: 819 KB - Last synced: 8 days ago - Pushed: 3 months ago - Stars: 33 - Forks: 3

brentp/indelope

find large indels (in the blind spot between GATK/freebayes and SV callers)

Language: Nim - Size: 133 KB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 39 - Forks: 1

sjackman/tigmint-paper

Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

Language: TeX - Size: 10.7 MB - Last synced: 15 days ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

sjackman/tigmint-data

Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

Language: Makefile - Size: 110 KB - Last synced: 15 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

sjackman/marmot-mitochondrion

Yellow-bellied marmot

Language: Makefile - Size: 83 KB - Last synced: 15 days ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

bcgsc/tigmint

⛓ Correct misassemblies using linked AND long reads

Language: Python - Size: 20.9 MB - Last synced: 15 days ago - Pushed: 8 months ago - Stars: 54 - Forks: 14

bcgsc/ntRoot

🌳 Human ancestry inference from genomic data

Language: Python - Size: 21.6 MB - Last synced: 15 days ago - Pushed: 16 days ago - Stars: 2 - Forks: 0

yeeus/GCI

A program for assessing the T2T genome continuity

Language: Python - Size: 1.3 MB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 28 - Forks: 0

LaboratorioBioinformatica/MAGset

MAGset is a tool to analyze and compare MAGs of known species

Language: Java - Size: 13.9 MB - Last synced: 17 days ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

iliapopov17/BI-Workshop-miniProjects

Repository for workshop study projects in Bioinformatics Institute 2023-2024

Language: Jupyter Notebook - Size: 16.1 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 0 - Forks: 0

CMU-SAFARI/BLEND

BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

Language: C - Size: 13.6 MB - Last synced: 19 days ago - Pushed: about 1 year ago - Stars: 34 - Forks: 3

BCCDC-PHL/routine-assembly

Pipeline for performing routine genome assembly

Language: Nextflow - Size: 86.9 KB - Last synced: 20 days ago - Pushed: 21 days ago - Stars: 1 - Forks: 0

alex-ranieri/viper

VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.

Language: Shell - Size: 126 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 4 - Forks: 0

bpucker/MGSE

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Language: Python - Size: 245 KB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 28 - Forks: 3

longg2/LongBioinformatics

Scripts used by George S. Long

Language: Shell - Size: 349 KB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 1 - Forks: 0

ClavelLab/genome-assembly

A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

Language: Python - Size: 107 KB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

NCBI-Hackathons/Annotation_Checker

This pipeline will check assembly and annotations based on gene families.

Language: Python - Size: 347 KB - Last synced: 30 days ago - Pushed: over 6 years ago - Stars: 0 - Forks: 1

natforsdick/kuaka-hifi-scripts

Genome assembly for Kuaka Whenua Hou

Language: Shell - Size: 223 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

at-cg/RAFT

Language: C++ - Size: 223 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 12 - Forks: 1

google/deeppolisher

Transformer-based sequence correction method for genome assembly polishing

Language: Jupyter Notebook - Size: 91.1 MB - Last synced: 8 days ago - Pushed: 4 months ago - Stars: 20 - Forks: 1

BioModelLab/A.rufa_genome

De novo assembly of the red legged patridge (Alectoris rufa) genome

Language: Jupyter Notebook - Size: 52.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

sanger-tol/genomeassembly

Implementation of ToL genome assembly workflows

Language: Nextflow - Size: 46.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 10 - Forks: 2

Gabaldonlab/redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Language: C++ - Size: 63.7 MB - Last synced: 12 days ago - Pushed: 5 months ago - Stars: 123 - Forks: 19

fedarko/pyfastg

A minimal Python library for parsing SPAdes FASTG files

Language: Python - Size: 136 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 6 - Forks: 0

lvrcek/GNNome-assembly

Learning to untangle genome assembly with graph neural networks.

Language: Python - Size: 88.4 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 69 - Forks: 11

BioJulia/GenomeGraphs.jl

A modern genomics framework for julia

Language: Julia - Size: 16.4 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 64 - Forks: 7

pmenzel/score-assemblies

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)

Language: Python - Size: 1.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 22 - Forks: 1

Nextomics/NextPolish2

Repeat-aware polishing genomes assembled using HiFi long reads

Language: Rust - Size: 7.4 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 44 - Forks: 0

srikanth-srinvas/MultiPolish-Dragonflye-Evaluation

A repository to automate genome assembly evaluation and benchmarking. Utilize scripts for Dragonflye with diverse polishing models on Illumina and Nanopore reads to fine-tune genome assemblies

Language: Python - Size: 67.4 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

marbl/MetaCarvel

MetaCarvel: A scaffolder for metagenomes

Language: C++ - Size: 6.11 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago - Stars: 13 - Forks: 14

jamiemcg/PhytophthoraGenomes

Phytophthora genome sequencing projects - assemblies and gene annotations

Size: 75.1 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

linxingchen/cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Language: Python - Size: 332 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 43 - Forks: 8

DRL/blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Language: Python - Size: 29.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 171 - Forks: 44

rhinempi/Reflexiv

Reflexiv - a distributed genome assembler using Reflexible Distributed Kmer

Language: Java - Size: 16.7 MB - Last synced: 2 months ago - Pushed: 8 months ago - Stars: 3 - Forks: 0

rpianezza/GenomeDelta

Library-free horizontal transfer detection, with a focus on transposable element invasions

Language: Shell - Size: 54.5 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 0

HuffordLab/NAM-genomes

Detailed bioinformatics scripts and methods used in the NAM genome paper.

Language: R - Size: 138 MB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 66 - Forks: 28

sjackman/sjackman.github.io

The personal web site of Shaun Jackman

Language: HTML - Size: 4.33 MB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 1 - Forks: 28

NBISweden/assembly-project-template

This is a template for all assembly projects. Please read the instructions below on how to use it.

Language: Shell - Size: 1.75 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 2 - Forks: 0

fmalmeida/MpGAP

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

Language: Nextflow - Size: 83.4 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 49 - Forks: 10

algbio/ggcat

Compacted and colored de Bruijn graph construction and querying

Language: Rust - Size: 4.2 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 66 - Forks: 11

sablokgaurav/genome_evaluator

a streamline analysis of the genome assemblies coming from the pacbiohifi and the other long reads and it not only uses BUSCO but also alignment based approaches to find the segmental and reference matching patterns. This allows you to have both the estimates the genome assembly based as well as the gene based assessment of the assembled genome

Size: 1.95 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

voutcn/megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language: C++ - Size: 3.05 MB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 543 - Forks: 133

roybarkan2020/AbsGenome

Genome assembly steps (Haliotis asinina)

Size: 2.59 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

pdimens/LepWrap

A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.

Language: Perl - Size: 9.73 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 9 - Forks: 1

a-ludi/dentist

Close assembly gaps using long-reads at high accuracy.

Language: D - Size: 19.5 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 45 - Forks: 6

compbiol/CAMSA

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Language: Python - Size: 6.46 MB - Last synced: about 2 months ago - Pushed: about 4 years ago - Stars: 24 - Forks: 4

natforsdick/kaki-genome-assembly

Scripts associated with kakī (*Himantopus novaezelandiae*) genome assembly using HiFi data

Language: Shell - Size: 134 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

natforsdick/weta-genome-assembly

All scripts related to genome assembly for giant wētā

Language: Shell - Size: 24 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

natforsdick/ONT-huhu

Repo containing all scripts associated with huhu nanopore data

Language: Shell - Size: 274 KB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

Rowena-h/GaeumannomycesGenomics

Scripts for Hill et al. (in prep) 🌾

Language: R - Size: 3.08 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

AmpliconSuite/AmpliconReconstructorOM

Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

Language: Python - Size: 46.6 MB - Last synced: 4 days ago - Pushed: 6 months ago - Stars: 14 - Forks: 6

bioinfologics/Pseudoseq.jl

Fake genomes, fake sequencing, real insights.

Language: Julia - Size: 7.25 MB - Last synced: about 24 hours ago - Pushed: over 2 years ago - Stars: 13 - Forks: 3

jadedavis5/diploidocus_setonix

Workflow to run Diploidocus on Setonix

Language: Shell - Size: 187 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0

jadedavis5/diploidocus_nextflow

Files to generate input files and run diploidocus on Setonix

Language: Shell - Size: 101 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

koszullab/instaGRAAL

Large genome reassembly based on Hi-C data, continuation of GRAAL

Language: Cuda - Size: 38.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 37 - Forks: 9

sablokgaurav/pacbio_hifiasm_polished

a streamline for the pacbiohifiasm and polishing and also making the contiguity maps both instance based and a snakemake code.

Size: 1.95 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

alipirani88/assemblage

Workflow to assemble and annotate bacterial genomes.

Language: Python - Size: 469 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 2

nf-core/denovohybrid Fork of caspargross/nf-core-denovohybrid 📦

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

Language: Nextflow - Size: 2.55 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 8 - Forks: 3

marbl/MetagenomeScope

Visualization tool for (meta)genome assembly graphs

Language: JavaScript - Size: 35.1 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 25 - Forks: 8

linzhi2013/MitoZ

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

Language: Shell - Size: 219 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 105 - Forks: 39

refgenie/refgenieserver

Serves a web interface and RESTful API for reference genome assets.

Language: Python - Size: 628 KB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 12 - Forks: 3

oushujun/LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Language: Perl - Size: 51.5 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 167 - Forks: 39

JiaoLaboratory/CRAQ

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

Language: Perl - Size: 204 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 41 - Forks: 3

nf-core/neutronstar 📦

De novo assembly pipeline for 10X linked-reads using Supernova

Language: Nextflow - Size: 71.3 MB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 4 - Forks: 5

GDKO/aladin

ALADIN (mitochondriAL circulAr Dna reconstItutioN)

Language: Python - Size: 47.9 KB - Last synced: 5 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

wennj/plasmid-collapse-gene-loss-unicycler-galaxy

Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.

Language: R - Size: 13.3 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

Tom-Jenkins/AssemblyStatsViewer

Web application to compare genome assembly stats from the NCBI

Language: JavaScript - Size: 106 KB - Last synced: 4 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

BCCDC-PHL/dragonflye-nf

Nextflow wrapper for the dragonflye assembler, with additional QC

Language: Nextflow - Size: 600 KB - Last synced: 27 days ago - Pushed: 6 months ago - Stars: 4 - Forks: 1

kalyaniasthana/GenomeSequencing_BioinformaticsII

Coding problems from course 2 of the Bioinformatics specialization

Language: Python - Size: 42 KB - Last synced: 5 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0