Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: genome-scaffolding
LiaOb21/colora
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete of organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
Language: Python - Size: 462 MB - Last synced: 25 days ago - Pushed: 26 days ago - Stars: 4 - Forks: 1
sjackman/tigmint-paper
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Language: TeX - Size: 10.7 MB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
sjackman/tigmint-data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Language: Makefile - Size: 110 KB - Last synced: about 1 month ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0
bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
Language: Python - Size: 20.9 MB - Last synced: about 1 month ago - Pushed: 9 months ago - Stars: 54 - Forks: 14
compbiol/CAMSA
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Language: Python - Size: 6.46 MB - Last synced: 3 months ago - Pushed: about 4 years ago - Stars: 24 - Forks: 4
bcgsc/SSAKE
🍶Genome assembly with short sequence reads
Language: Perl - Size: 28.5 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 24 - Forks: 11
malonge/RaGOO
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Language: Python - Size: 143 KB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 162 - Forks: 28
tanghaibao/allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Language: Jupyter Notebook - Size: 28.6 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 56 - Forks: 11
jteutenberg/downpore
Suite of tools for use in genome assembly and consensus. Work in progress.
Language: Go - Size: 332 KB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 31 - Forks: 0
bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
Language: Python - Size: 2.17 MB - Last synced: 27 days ago - Pushed: 2 months ago - Stars: 15 - Forks: 7
wtsi-hpag/scaffHiC
Pipeline for genome scaffolding by modelling distributions of HiC pairs
Language: C - Size: 46.5 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 6 - Forks: 1
wangyibin/collapse_rescue
Method for rescuing collapsed contigs.
Language: Python - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
suzuki-shm/RaGOO-in-cwl
Wrapper tool of RaGOO by CWL and Docker
Language: Common Workflow Language - Size: 8.79 KB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 0
