GitHub topics: hic-analysis

Configurable Hi-C pipeline that is easy to use

Language: Python - Size: 328 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 3 - Forks: 1

Topologically Associating Domain optimal set prediction using Armatus software

Language: Python - Size: 14.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

Code for my Master project

Language: Python - Size: 1.55 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 3 - Forks: 1

Chromatin loop caller using Topological Data Analysis based on Hi-C data

Language: Python - Size: 625 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1

This repo contains computational analysis performed in Li21.

Language: Jupyter Notebook - Size: 8.79 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

Pipeline for genome scaffolding by modelling distributions of HiC pairs

Language: C - Size: 46.5 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

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