lh3/minigraph

Sequence-to-graph mapper and graph generator

Language: C - Size: 926 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 391 - Forks: 37

gauravcodepro/miniprot-protein-annotator

from protein alignments to deep learning preparatory.

Language: Python - Size: 74.2 KB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 0 - Forks: 0

lh3/gfatools

Tools for manipulating sequence graphs in the GFA and rGFA formats

Language: C - Size: 542 KB - Last synced: 17 days ago - Pushed: 3 months ago - Stars: 197 - Forks: 18

RolandFaure/GenomeTailor

Modifies an assembly with sequencing reads to ensure all reads align end-to-end on the assembly

Language: C++ - Size: 16.4 MB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 2 - Forks: 0

MoMI-G/MoMI-G

Modular Multi-scale Integrated Genome Graph Browser

Language: TypeScript - Size: 9.33 MB - Last synced: about 1 month ago - Pushed: about 2 months ago - Stars: 84 - Forks: 6

vgteam/vg

tools for working with genome variation graphs

Language: C++ - Size: 138 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1,055 - Forks: 189

BioJulia/GenomeGraphs.jl

A modern genomics framework for julia

Language: Julia - Size: 16.4 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago - Stars: 64 - Forks: 7

cccnrc/plot-VCF

visual analysis of your VCF files

Language: R - Size: 75.9 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 12 - Forks: 2

mcveanlab/mccortex

De novo genome assembly and multisample variant calling

Language: C - Size: 9.86 MB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 107 - Forks: 24

maingoc303/Graph_Genome

Language: HTML - Size: 14.8 MB - Last synced: 9 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

iqbal-lab-org/gramtools

Genome inference from a population reference graph

Language: C++ - Size: 14.7 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 89 - Forks: 14

jlboat/VGTool Fork of Johanvb/VGTool

A tool for modelling graphs of genetic variation.

Language: Java - Size: 22.8 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

ChaissonLab/danbing-tk

Toolkit for VNTR genotyping and repeat-pan genome graph construction

Language: Python - Size: 55.1 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 18 - Forks: 3

JerryPan2718/Microbiome-PTR

Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.

Language: C - Size: 39.1 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

ratschlab/genome_graph_annotation

Sparse Binary Relation Representations for Genome Graph Annotation

Language: C++ - Size: 1.72 MB - Last synced: 9 months ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 0

edawson/svaha2

Linear-time, low-memory construction of variation graphs

Language: C++ - Size: 609 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 17 - Forks: 0

jachansantiago/vg_recal

This is experiment to measure performance in vg recalibrate, testing different models.

Language: Jupyter Notebook - Size: 1.45 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

cartoonist/gcsa-locate

Locate k-mers in variation graphs using GCSA2

Language: M4 - Size: 149 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0