cucapra/pollen

generating hardware accelerators for pangenomic graph queries

Language: Python - Size: 33 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 24 - Forks: 1

miikanissi/zebrafy

Python library for converting PDF and images to and from Zebra Programming Language (ZPL).

Language: Python - Size: 2.44 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 20 - Forks: 4

ggonnella/gfapy

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

Language: Python - Size: 9.04 MB - Last synced: 14 days ago - Pushed: 4 months ago - Stars: 64 - Forks: 6

nguyetdang/BioGraph.jl

A Julia package for handle genome graph in the GFA format.

Language: Julia - Size: 191 KB - Last synced: 16 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 0

GFA-spec/GFA-spec

Graphical Fragment Assembly (GFA) Format Specification

Language: Makefile - Size: 1.08 MB - Last synced: 23 days ago - Pushed: about 1 year ago - Stars: 185 - Forks: 42

SimonWaldherr/zplgfa

#Golang package and cli tool for converting to #ZPL (from PNG, JPEG and GIF) for @ZebraTechnology-printers

Language: Go - Size: 136 KB - Last synced: 23 days ago - Pushed: 11 months ago - Stars: 63 - Forks: 17

heringerp/oxiqle Fork of oxigraph/oxigraph

SPARQL endpoint to represent pangenomic data

Language: HTML - Size: 5.61 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 1

pangenome/spodgi

RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

Language: Python - Size: 91.8 KB - Last synced: 7 days ago - Pushed: 2 months ago - Stars: 11 - Forks: 4

marschall-lab/panacus

Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

Language: Rust - Size: 3.31 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 57 - Forks: 4

jasperlinthorst/reveal

Graph based multi genome aligner

Language: Python - Size: 6.48 MB - Last synced: 21 days ago - Pushed: over 2 years ago - Stars: 43 - Forks: 3

edawson/gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

Language: C++ - Size: 1.87 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 48 - Forks: 21

marschall-lab/GFAffix

GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

Language: Rust - Size: 5.68 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 33 - Forks: 4

ProgrammingLife2017/DynamiteAndButterflies

Genome parser and visualisation

Language: Java - Size: 7.92 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

AndreaGuarracino/rs-spodgi

Line-by-line converter from GFA to RDF (turtle)

Language: Rust - Size: 20.5 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 3 - Forks: 1

will-rowe/gfa

A Go library for working with Graphical Fragment Assembly format

Language: Go - Size: 43.9 KB - Last synced: 11 months ago - Pushed: about 5 years ago - Stars: 6 - Forks: 1

edawson/svaha

Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]

Language: C++ - Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 11 - Forks: 0

Brown-University-Library/OLD-ARCHIVED_easyscan 📦

Web-app that handles submitting scan-requests to the Annex.

Language: Python - Size: 304 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 1

Flavia95/VGpop

Population genetics analysis on VG

Language: Python - Size: 857 KB - Last synced: 9 months ago - Pushed: about 3 years ago - Stars: 15 - Forks: 3

HopedWall/rs-gfatovcf

Rust implementation of Flavia95's GFAtoVCF

Language: Rust - Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 13 - Forks: 1

edawson/svaha2

Linear-time, low-memory construction of variation graphs

Language: C++ - Size: 609 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 17 - Forks: 0

roh6608/gliderScore

A repository for scoring gliding competitions, that aims to be efficient and accurate.

Language: Go - Size: 8.99 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

DrStiev/rs-handlegfa

Language: Rust - Size: 75.7 MB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0