GitHub topics: variation-graphs
dubssieg/rs-pancat-compare
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
Language: Rust - Size: 2.79 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 9 - Forks: 0
dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
Language: Python - Size: 290 KB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1
dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Language: Python - Size: 10.4 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 32 - Forks: 1
at-cg/PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
Language: C - Size: 3.79 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 36 - Forks: 4
dubssieg/pangenome-notes Fork of jackyzha0/quartz
Notes upon pangenome graphs construction
Language: TypeScript - Size: 8.64 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
jorgeavilacartes/panricci
Alignment of Pangenome Graphs with Ricci Flow
Language: Jupyter Notebook - Size: 1.22 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
dubssieg/sharepg
Analysis of shared parts of a pangenome
Language: Python - Size: 22.5 KB - Last synced at: 10 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
kevsilva/StrainFLAIR
Strain-level abundances estimation in metagenomic samples using variation graphs
Language: Python - Size: 75.2 MB - Last synced at: 10 days ago - Pushed at: over 2 years ago - Stars: 25 - Forks: 5
heringerp/oxiqle Fork of oxigraph/oxigraph
SPARQL endpoint to represent pangenomic data
Language: HTML - Size: 5.61 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
pangenome/spodgi
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
Language: Python - Size: 91.8 KB - Last synced at: about 13 hours ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 4
HopedWall/rs-gfatovcf
Rust implementation of Flavia95's GFAtoVCF
Language: Rust - Size: 10.6 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 13 - Forks: 1
