GitHub topics: strains
RolandFaure/Alice-asm
Fast and haplotype-aware assembler
Language: C++ - Size: 42.4 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 1 - Forks: 0
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
Language: Python - Size: 56.7 MB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 40 - Forks: 6
MineralsCloud/EquationsOfStateOfSolids.jl
A Julia package for fitting the equation of state of solids, and more
Language: Julia - Size: 4.71 MB - Last synced at: 12 days ago - Pushed at: 6 months ago - Stars: 14 - Forks: 0
kevsilva/StrainFLAIR
Strain-level abundances estimation in metagenomic samples using variation graphs
Language: Python - Size: 75.2 MB - Last synced at: 5 days ago - Pushed at: over 2 years ago - Stars: 25 - Forks: 5
gugarosa/leaflyer 📦
🍀 Scraps data from Leafly and collects amazing weed-based meta-data.
Language: Python - Size: 51.8 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 3
PeltzLab-Stanford/mMap
Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features
Language: Python - Size: 7.38 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1
raghavagps/FluSPred
Prediction infectious strains of Influenza A virus for human
Language: Python - Size: 28.2 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1
zhixingfeng/iGDA
Detect and phase minor SNVs from long-read sequencing data
Language: C++ - Size: 114 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 0
gsiekaniec/ORI
ORI (Oxford nanopore Reads Identification) is a software allowing, from long nanopore reads, to identify the bacterial strains present in a sample.
Language: C++ - Size: 13.7 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
