SysBioChalmers/RAVEN

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Language: MATLAB - Size: 1010 MB - Last synced: about 3 hours ago - Pushed: about 10 hours ago - Stars: 97 - Forks: 52

opencobra/cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Language: MATLAB - Size: 1.02 GB - Last synced: about 5 hours ago - Pushed: about 5 hours ago - Stars: 237 - Forks: 302

holukas/diive

Time series processing library

Language: Python - Size: 580 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 6 - Forks: 3

jotech/gapseq

Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks

Language: R - Size: 396 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 139 - Forks: 28

malonge/RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language: Python - Size: 278 KB - Last synced: 3 days ago - Pushed: 3 months ago - Stars: 430 - Forks: 45

silve92/MetPyQC

Python library for quality control and reconstruction of meteorological data

Language: Python - Size: 6.55 MB - Last synced: 1 day ago - Pushed: over 2 years ago - Stars: 4 - Forks: 1

a-ludi/dentist

Close assembly gaps using long-reads at high accuracy.

Language: D - Size: 19.5 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 45 - Forks: 6

spatialstatisticsupna/RGISTools

Tools for Downloading, Customizing, and Processing Time Series of Satellite Images from Landsat, MODIS, and Sentinel

Language: R - Size: 4.51 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 51 - Forks: 15

jiezhou87/HANTS-GEE

A scalable implimentation of HANTS for time sereis reconstruction in remote sensing on Google Earth Engine platform

Language: Python - Size: 1.75 MB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 23 - Forks: 4

mkjung99/gapfill_examples

Examples of using GapFill module

Size: 3.1 MB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

INGV/RESTORE

Missing earthquake data reconstruction in the space-time-magnitude domain

Language: Python - Size: 715 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 7 - Forks: 1

cfrioux/fluto

Language: Python - Size: 308 KB - Last synced: 5 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1

Matteopaluh/KEMET

KEGG Module Evaluation Tool

Language: Python - Size: 178 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 15 - Forks: 5

mkjung99/gapfill

GapFill: gap filling functions for motion capture marker data

Language: Python - Size: 26.4 KB - Last synced: 4 months ago - Pushed: almost 4 years ago - Stars: 9 - Forks: 4

ohidaoui/PV-Gap-Filling

Gap filling for power generation time series data of PV (Photovoltaic) systems.

Language: Jupyter Notebook - Size: 9.6 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

Lygeri-Sakellaridi/Evaluation-of-gap-filling-algorithms-for-genome-scale-metabolic-models

Msc thesis project. Evaluation of gap-filling tools for constraint-based, genome-scale models.

Language: Python - Size: 5.7 MB - Last synced: 8 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

rikuu/Gap2Seq

Gap2Seq is a gap filling and insertion genotyping tool.

Language: C++ - Size: 2.78 MB - Last synced: 6 months ago - Pushed: about 3 years ago - Stars: 15 - Forks: 6

ganlab/GALA

Long-reads Gap-free Chromosome-scale Assembler

Language: Python - Size: 4.87 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 60 - Forks: 12

merlyescalona/yagcloser

YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.

Language: Python - Size: 85 KB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 5 - Forks: 0

juliajoswig/Repo_BHPMF_bias

This is the accompanying repository to the study "Gap-filling of plant trait data with BHPMF induces taxonomic patterns"

Language: R - Size: 14.4 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

pwendering/COMMIT

COMMIT: Community-dependent gap-filling considering metabolite leakage

Language: MATLAB - Size: 1.78 GB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 2

LaurensArp/VPint

Value propagation-based spatial/spatio-temporal interpolation

Language: Python - Size: 3.92 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 0

a-ludi/dentist-example 📦

A small example to test DENTIST's workflow

Language: Python - Size: 127 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

mcuntz/hesseflux

hesseflux provides functions used in the processing and post-processing of the Eddy covariance flux data of the ICOS ecosystem site FR-Hes.

Language: Python - Size: 8.81 MB - Last synced: about 13 hours ago - Pushed: about 1 year ago - Stars: 8 - Forks: 3

OmarZOS/Gap_Puzzle

Gap puzzle generator and solver using C++ and Cadical

Language: C++ - Size: 9.77 KB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

comery/HIFI-barcode-hiseq

A housed python program to analyze NGS data for HIFI-barcode project

Language: Python - Size: 2.07 MB - Last synced: 6 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

algbio/Introduction-to-Applied-Bioinformatics

Genome assembly - From theory to practice (and back)

Size: 2.46 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0

dbrowneup/Jelly2

A gap filling tool for genomes that utilizes PacBio long reads

Language: Python - Size: 3.81 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 3 - Forks: 1