Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: longread
LBGC-CFB/LoRID
Long Read Isoform Discovery tool
Language: Python - Size: 31.8 MB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 1 - Forks: 0
yakovlevga/brickyeditor
WYSIWYG block editor jQuery plugin.
Language: TypeScript - Size: 2.5 MB - Last synced: 15 days ago - Pushed: over 3 years ago - Stars: 115 - Forks: 19
gauravcodepro/pacbio-nanopore-polyATGC-trimmer
A regular expression based polyATGC trimmer for the long reads or the fastq reads extremely fast and returns a fasta and also a dataframe for the sequence classification
Language: Python - Size: 23.4 KB - Last synced: 24 days ago - Pushed: 30 days ago - Stars: 0 - Forks: 0
gauravcodepro/pangraphs-genome-assembly
a complete workflow that can be dockerized for the long read assembly, it allows for the genome assembly update as well as it allows for the assembly from the start. if you have the illumina reads it allows for the genome mapping also
Language: Shell - Size: 197 KB - Last synced: 24 days ago - Pushed: 30 days ago - Stars: 2 - Forks: 0
gauravcodepro/pacbio-nanopore-repeat-coverage
a long read repeat coverage calculator,given an long read file before assembly either direct from the sequencing runs or after the cleaning, it calculates the total amount of the repeat stretches present in the sequencing reads and you can plot them before assembly
Language: Python - Size: 18.6 KB - Last synced: 24 days ago - Pushed: 30 days ago - Stars: 1 - Forks: 0
jguhlin/minimap2-rs
Rust bindings to minimap2 library
Language: Rust - Size: 21.4 MB - Last synced: 15 days ago - Pushed: 3 months ago - Stars: 51 - Forks: 10
Runsheng/trackcluster
An analysis pipeline for Nanopore direct-RNA sequencing
Language: Python - Size: 3.4 MB - Last synced: 13 days ago - Pushed: 3 months ago - Stars: 10 - Forks: 3
ahcm/longread_plots
A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.
Language: Python - Size: 593 KB - Last synced: 25 days ago - Pushed: over 1 year ago - Stars: 12 - Forks: 0
PASSIONLab/ELBA
Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly
Language: C++ - Size: 106 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 12 - Forks: 8
ayoraind/strainberry
Nextflow Pipeline for Strain Resolution from Long Reads
Language: Nextflow - Size: 18.6 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0
HMPNK/CSA2.6
Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
Language: Perl - Size: 1.52 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 10 - Forks: 6
unique379r/strspy
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
Language: Shell - Size: 34.8 MB - Last synced: 9 months ago - Pushed: 10 months ago - Stars: 15 - Forks: 5
kniazevgeny/projetsdg7
Research-longread about renewables developpement in Russia
Language: Vue - Size: 175 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
icemduru/listeria_ro15_transcript
The web genome viewer is live at https://icemduru.github.io/listeria_ro15_transcript/
Language: C++ - Size: 849 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
anydnny/factory-records-article
🏭 article about Factory Records label
Language: HTML - Size: 51.1 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
