AgnostiqHQ/covalent

Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.

Language: Python - Size: 370 MB - Last synced: about 5 hours ago - Pushed: about 9 hours ago - Stars: 702 - Forks: 86

YichaoOU/HemTools

HemTools: a collection of NGS pipelines and bioinformatic analyses

Language: Python - Size: 844 MB - Last synced: about 17 hours ago - Pushed: about 18 hours ago - Stars: 60 - Forks: 16

pylbm/pylbm

Numerical simulations using flexible Lattice Boltzmann solvers

Language: Jupyter Notebook - Size: 22.9 MB - Last synced: about 20 hours ago - Pushed: about 21 hours ago - Stars: 134 - Forks: 46

MetPX/sarracenia

https://MetPX.github.io/sarracenia

Language: Python - Size: 45.1 MB - Last synced: about 21 hours ago - Pushed: 1 day ago - Stars: 44 - Forks: 22

tianhao-ai/COMP90024-ASMT1-Social-Media-Analytics

This project using the a multi-core framework MPI to process the data parallel, and using the Linux command and slurm script to interact with a cluster.

Language: Jupyter Notebook - Size: 2.68 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 4 - Forks: 0

MFlowCode/MFC

Exascale multiphase flow simulation

Language: Fortran - Size: 448 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 125 - Forks: 56

UCL-CCS/EasyVVUQ

Python 3 framework to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.

Language: Jupyter Notebook - Size: 18.6 MB - Last synced: 1 day ago - Pushed: 5 months ago - Stars: 85 - Forks: 26

zjin-lcf/HeCBench

Language: C++ - Size: 232 MB - Last synced: about 17 hours ago - Pushed: 8 days ago - Stars: 176 - Forks: 65

Chaste/Chaste

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Language: C++ - Size: 319 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 115 - Forks: 55

gauravcodepro/streamlit-up-application

multipage web application for Univeristat Potsdam DevOPs.

Language: Python - Size: 440 KB - Last synced: 3 days ago - Pushed: 4 days ago - Stars: 0 - Forks: 0

eddelbuettel/ctv-hpc

CRAN Task View: High-Performance Computing with R

Language: R - Size: 233 KB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 39 - Forks: 20

Awallace3/hrcl_jobs

Use main thread to communicate with SQL database and run passed functions on worker threads.

Language: Python - Size: 306 KB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 1 - Forks: 1

LLNL/CARE

CHAI and RAJA provide an excellent base on which to build portable codes. CARE expands that functionality, adding new features such as loop fusion capability and a portable interface for many numerical algorithms. It provides all the basics for anyone wanting to write portable code.

Language: C++ - Size: 1.19 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 28 - Forks: 4

ncar-xdev/repo2apptainer

Repo2apptainer: Wrapper around repo2docker producing Jupyter enabled Apptainer/Singularity images.

Language: Python - Size: 56.6 KB - Last synced: 10 days ago - Pushed: 11 days ago - Stars: 6 - Forks: 0

kofemann/mpi4j

Java 22 binding to MPI using foreign-function-interface

Language: Java - Size: 12.7 KB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 1 - Forks: 0

DrSnowbird/docker-hpc-gamess-ubuntu

docker-hpc-gamess-ubuntu

Language: Shell - Size: 35.2 KB - Last synced: 15 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

AgnostiqHQ/covalent-slurm-plugin

Executor plugin interfacing Covalent with Slurm

Language: Python - Size: 366 KB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 27 - Forks: 5

daormar/debasher

DeBasher: a Flow-Based Programming Extension for Bash

Language: Shell - Size: 4 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 2 - Forks: 2

DATAOORTS/EverRun-Demo

EverRun By Dataoorts

Language: Jupyter Notebook - Size: 167 KB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 0 - Forks: 0

yodeng/hpc-blast

divide blast query and run all chunks across HPC or localhost in parallelly

Language: Python - Size: 42 KB - Last synced: 3 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 0

Blackmesa-Canteen/HPC-paralleled-tweet-analyser

Cluster and Cloud Computing Project. This application achieved language statistics within a larget amount of tweets in HPC cluster, with MPI protocol. COMP90024_Assignment_1.

Language: Python - Size: 4.66 MB - Last synced: 24 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

Foundations-of-HPC/Advanced-High-Performance-Computing-2023

Slides, exercises and resources for the 2023-2024 course "Advanced High Performance Computing" under the at "Scientific and Data-Intensive Computing" Master Program at University of Trieste

Language: C - Size: 5.77 MB - Last synced: 30 days ago - Pushed: about 1 month ago - Stars: 3 - Forks: 1

jishnub/ParallelUtilities.jl

Fast and easy parallel mapreduce on HPC clusters

Language: Julia - Size: 992 KB - Last synced: 22 days ago - Pushed: over 2 years ago - Stars: 31 - Forks: 0

IBMSpectrumComputing/lsf-perl-api

Location for the LSF Perl Module to manipulate all things LSF

Language: XS - Size: 325 KB - Last synced: 25 days ago - Pushed: 25 days ago - Stars: 16 - Forks: 9

FluidNumerics/rcc-apps

Create VM images for HPC applications on Google Cloud Platform

Language: HCL - Size: 426 KB - Last synced: 25 days ago - Pushed: almost 2 years ago - Stars: 7 - Forks: 3

IBMSpectrumComputing/lsf-drmaa

Location for the LSF DRMAA API originally creaded by FedStage

Language: Shell - Size: 624 KB - Last synced: 26 days ago - Pushed: 7 months ago - Stars: 18 - Forks: 11

IBMSpectrumComputing/lsf-python-api

Location for the LSF Python wrapper for controlling all things LSF

Language: SWIG - Size: 168 KB - Last synced: 26 days ago - Pushed: about 2 months ago - Stars: 101 - Forks: 64

cyverseuk/GWASSER

Dockerized Agave app for GWASSER, an R script for simple gwassing.

Language: R - Size: 38.1 KB - Last synced: 30 days ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

MonkD3/mpi-rr

Small library for performing rank-reordering using graph-partitioning for MPI

Language: C - Size: 25.4 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

nimbix/app-openfoam

Language: Shell - Size: 2.65 MB - Last synced: about 1 month ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

OSC/ondemand

Supercomputing. Seamlessly. Open, Interactive HPC Via the Web

Language: JavaScript - Size: 30.8 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 244 - Forks: 95

TheRoddyWMS/Roddy

The Roddy workflow development and management system.

Language: Groovy - Size: 302 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 3

hfp/xconfigure

High-Performance configuration patterns and recipes.

Language: Shell - Size: 14.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 44 - Forks: 13

code-saturne/code_saturne

code_saturne public mirror

Language: C - Size: 145 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 207 - Forks: 73

ifountoul/SSA2py

SSA2py: Source-Scanning Algorithm in Python

Language: Python - Size: 44.2 MB - Last synced: 23 days ago - Pushed: about 2 months ago - Stars: 7 - Forks: 2

espressopp/espressopp

Main ESPResSo++ repository

Language: C++ - Size: 69.8 MB - Last synced: about 1 hour ago - Pushed: about 2 hours ago - Stars: 42 - Forks: 33

cea-hpc/hp2p

Heavy Peer To Peer: a MPI based benchmark for network diagnostic

Language: C - Size: 3.17 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 20 - Forks: 10

uiuc-hpc/Recorder

Multi-level I/O tracing library

Language: C - Size: 16.3 MB - Last synced: 8 days ago - Pushed: 9 days ago - Stars: 42 - Forks: 11

Sinan81/sinan81.github.io

miscellaneous stuff

Size: 9.77 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

Foundations-of-HPC/High-Performance-Computing-2023

Slides, exercises and resources for the 2023-2024 course "High Performance Computing" under the "Scientific and Data-Intensive Computing" Naster Program at University of Trieste

Language: C - Size: 36.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 18 - Forks: 2

NucciTheBoss/jespipe

Jespipe: A Plugin-Based, Open MPI Framework for Adversarial Machine Learning Analysis.

Language: Python - Size: 1.54 MB - Last synced: about 2 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

marianoktm/GVirtuS Fork of gvirtus/GVirtuS

A GPGPU Transparent Virtualization Component for High Performance Computing Clouds.

Language: C++ - Size: 11.7 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

louisaslett/kalis

kalis: High Performance Li & Stephens Local Ancestry Inference

Language: C - Size: 18.2 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 1

JBris/slurm-rest-api-docker

A test Docker build for SLURM with the SLURM REST API configured.

Language: Dockerfile - Size: 72.3 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

SJTU-HPC/ood-app-sjtu

Open OnDemand Application Collection for SJTU HPC

Language: Shell - Size: 417 KB - Last synced: 29 days ago - Pushed: almost 3 years ago - Stars: 8 - Forks: 3

Kapernikov/gpu-normal-computation

Performing normal computation for big point clouds on the gpu using openCL

Language: C++ - Size: 19.5 KB - Last synced: about 2 months ago - Pushed: almost 6 years ago - Stars: 14 - Forks: 4

Farhateberr/Ferhat-dz

Config files for my GitHub profile.

Size: 1.95 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

OSC/ood-ansible

An ansible role for Open Ondemand

Language: Jinja - Size: 290 KB - Last synced: 10 days ago - Pushed: about 2 months ago - Stars: 25 - Forks: 29

IGBIllinois/easybuild

IGB Cluster Easybuild Easyconfigs

Language: Python - Size: 26 MB - Last synced: 30 days ago - Pushed: 30 days ago - Stars: 3 - Forks: 1

dgFemtoLab/eduhipc2019

Repository for teaching materials and tools.

Language: TeX - Size: 963 KB - Last synced: 4 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

jassifx/XenonDNS Fork of ctxis/SnitchDNS

Database Driven High Performance DNS Server with a Web UI

Language: Python - Size: 3.29 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

GooglingTheCancerGenome/sv-callers

Snakemake-based workflow for detecting structural variants in genomic data

Language: Python - Size: 210 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 69 - Forks: 26

MultithreadCorner/TCode

Application for simulation of solid state sensor response

Language: C++ - Size: 2.22 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 8 - Forks: 4

lanl/vpic

Vector Particle-In-Cell (VPIC) Project

Language: C++ - Size: 23 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 142 - Forks: 73

MultithreadCorner/Hydra

Header only framework for data analysis in massively parallel platforms.

Language: C++ - Size: 133 MB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 105 - Forks: 21

lunarc/mbrowser

LMOD Graphical module browser

Language: Python - Size: 42 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

fraMade/MD_ligand_receptor

MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structures starting from a molecular dynamic trajectory.

Language: Python - Size: 25.3 MB - Last synced: 4 months ago - Pushed: 11 months ago - Stars: 4 - Forks: 2

ikizhvatov/jlsca-tutorials

Tutorials and examples on how to use Jlsca, the high-performance side channel analysis toolkit written in Julia

Language: Jupyter Notebook - Size: 14.1 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 43 - Forks: 5

PASSIONLab/ELBA

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

Language: C++ - Size: 106 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 12 - Forks: 8

TACC/hpc_spec

A collection of tasty RPM recipes for TACC software on TACC hardware.

Size: 4.41 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 7 - Forks: 1

ritchieng/fractional_differencing_gpu

Rapid large-scale fractional differencing with NVIDIA RAPIDS and GPU to minimize memory loss while making a time series stationary. 6x-400x speed up over CPU implementation.

Language: Jupyter Notebook - Size: 5.24 MB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 55 - Forks: 10

xcompact3d/Old_Incompact3d 📦

Old version of our solver for the incompressible Navier-Stokes equations (no longer actively developed, please use the latest version of Incompact3d

Language: Fortran - Size: 142 KB - Last synced: 6 months ago - Pushed: about 6 years ago - Stars: 4 - Forks: 2

sthavishtha/list-lattice-Boltzmann-codes

Curated list of some open source codes employing lattice Boltzmann methods

Size: 68.4 KB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 134 - Forks: 37

range3/rdbench

2D reaction-diffusion system benchmark using MPI and MPI-IO.

Language: C - Size: 23.2 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0

Zlisch/LargeMM

A CUBLAS‐CUDA Based Implementation of Multi-GPU Large Matrix Multiplication

Language: Cuda - Size: 196 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

ml4py/speclus4py

Spectral clustering implementation for distributed machine learning

Language: Python - Size: 82 KB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

siravan/CuDiff.jl

Language: Julia - Size: 62.5 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 1 - Forks: 0

cyverseuk/RAxML

RAxML agave app and docker image

Language: Shell - Size: 26.4 KB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/Trimmomatic

docker image and Agave app for Trimmomatic software

Size: 3.91 KB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/renseq

Renseq Pacbio pipeline

Language: Shell - Size: 34.2 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 2

cyverseuk/tuxedo

Tuxedo suite for up to 4 conditions

Language: Python - Size: 24.4 KB - Last synced: 7 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

minirookie/Structure_Data_Processing_Pipeline

Script Python and HPC commands in Shell to run pipeline and process research (crystallographic) data

Language: Shell - Size: 37.1 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

WRF-CMake/wrf Fork of wrf-model/WRF

🌀 The Weather Research and Forecasting (WRF) model with CMake support

Language: Fortran - Size: 331 MB - Last synced: 4 months ago - Pushed: about 2 years ago - Stars: 42 - Forks: 3

cwatson/mri_library

Scripts for MRI preprocessing

Language: Shell - Size: 146 KB - Last synced: about 1 month ago - Pushed: over 3 years ago - Stars: 8 - Forks: 3

insigneo-pfire/pFIRE Fork of INSIGNEO/pFIRE

The Parallel Framework for Image Registration

Language: C++ - Size: 31.2 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

Qeolvdxu/pcg_precision_comparison

Compare preconditioned conjugate gradient algorithm with different sparse matrices, floating point precision levels, and implementations

Language: C - Size: 17.4 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 7 - Forks: 0

valinsogna/2021Assignement02

Parallel implementation of kd-tree construction using MPI & OpenMP. Features include efficient data point generation, tree visualization, scalability tests, and performance optimizations. Aims to address challenges like false sharing & workload imbalances.

Language: HTML - Size: 1.32 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

tongsucn/hptt

High Performance Tensor Transpose in C++

Language: C++ - Size: 729 KB - Last synced: 9 months ago - Pushed: about 7 years ago - Stars: 2 - Forks: 0

dvsingh9/slurm-api Fork of UFResearchComputing/slurm-api

A RESTful interface to SLURM

Size: 43 KB - Last synced: 9 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

GenomicsCoreLeuven/vsc_ngs_workshop

This is the repository of the Genomics Core High Performance Computing for Genomics workshop.

Language: Shell - Size: 15.9 MB - Last synced: 9 months ago - Pushed: over 4 years ago - Stars: 5 - Forks: 2

NucciTheBoss/cleantest

A testing framework that brings up clean environments and mini-clusters for developers in a hurry

Language: Python - Size: 3.78 MB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 11 - Forks: 2

rubenandrebarreiro/fct-nova-high-performance-computing-labs-part-1

⏱️ 📈 💎 Projects based in High Performance Computing Labs. This projects was built using C++ (C Plus Plus) and CUDA (Compute Unified Device Architecture). This repository it's based in some practical lab exercises and examples related with High Performance Computing, among many others!

Language: Cuda - Size: 3.04 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 1 - Forks: 0

SyntaxRules/syntaxrules.github.io

Main website

Language: SCSS - Size: 7 MB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

GregaVrbancic/homebrew-hpc

Homebrew tap for HPC software

Language: Ruby - Size: 18.6 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

real-space/.github

Profile of Real-Space DFT Developments at Jülich Supercomputing Centre

Size: 157 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

arneish/MPI-pattern-matching

A C++ implementation of a periodic-pattern matching parallel algorithm using MPICH 3.2 implementation of the MPI distributed-computing standard

Language: C - Size: 1.38 MB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 7 - Forks: 0

CSCfi/ansible-role-singularity

Install and configure singularity https://singularity.lbl.gov

Language: Shell - Size: 30.3 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 2

cyverseuk/uncompress_gunzip

Size: 1.95 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/samtools

Language: Shell - Size: 10.7 KB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

cyverseuk/sickle

Language: Shell - Size: 6.84 KB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

cyverseuk/portcullis

portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis

Language: Shell - Size: 6.84 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/ontologizer

Language: Shell - Size: 5.86 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/MUSCLE

Language: Shell - Size: 3.91 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 1

cyverseuk/cyverseuk-util

A collection of scripts for the cyverse UK clusters

Language: Python - Size: 14.1 MB - Last synced: 10 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 1

cyverseuk/cut_columns

Language: Shell - Size: 3.91 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

cyverseuk/cutadapt

Language: Shell - Size: 7.81 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/Cufflinks

Language: Shell - Size: 14.6 KB - Last synced: 10 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

cyverseuk/concatenate_files

Language: Shell - Size: 3.91 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/Bowtie2

Language: Shell - Size: 10.7 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

cyverseuk/beast2

Beast 2 agave & docker package

Language: Shell - Size: 13.7 KB - Last synced: 10 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0