dell/omnia

An open-source toolkit for deploying and managing high performance clusters for HPC, AI, and data analytics workloads.

Language: YAML - Size: 64.7 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 192 - Forks: 103

dask/dask-jobqueue

Deploy Dask on job schedulers like PBS, SLURM, and SGE

Language: Python - Size: 667 KB - Last synced: 1 day ago - Pushed: about 2 months ago - Stars: 230 - Forks: 137

gauravcodepro/pacbiohifi-universitat-potsdam

a slurm configuration analytical pipline for the analysis of the pacbiohifi sequencing genomes using the verkko, hifiasm and the genomeasm4pg. only provide the link to the sequencing or the files with the folder and rest it will do the work

Language: Shell - Size: 15.6 KB - Last synced: 8 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

uabrc/uabrc.github.io

UAB Research Computing Documentation

Language: HTML - Size: 60.9 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 20 - Forks: 11

gauravcodepro/shell-repo-generator

a shell sudo repor generator for finding and updating the packages on the cloud instances and also the slurm and the pbs instances. just provide the instance name and the package to be seached and it will bring down all the install available.

Language: Shell - Size: 11.7 KB - Last synced: 8 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

daormar/debasher

DeBasher: a Flow-Based Programming Extension for Bash

Language: Shell - Size: 4 MB - Last synced: 19 days ago - Pushed: 20 days ago - Stars: 2 - Forks: 2

thediymaker/slurm-node-dashboard

Slurm HPC node status page

Language: TypeScript - Size: 405 KB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 0 - Forks: 0

qtop/qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:

Language: Python - Size: 2.49 MB - Last synced: about 5 hours ago - Pushed: 1 day ago - Stars: 33 - Forks: 16

h-0-0/slune

A super simplistic way to perform hyperparameter tuning (and other things!) on SLURM. Made to be quick and easy to use and build on! and to get your jobs done faster.

Language: Python - Size: 239 KB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 4 - Forks: 0

intentropy/python-slurmenv

This is an importable python package that provides an Enum containing SLURM sbatch/srun environment variables.

Language: Python - Size: 10.7 KB - Last synced: 30 days ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

YodaEmbedding/easy-slurm

Easily manage and submit robust jobs to Slurm using Python and Bash.

Language: Python - Size: 1.74 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 5 - Forks: 0

Isy89/hpc-ds-utils

This repository provides a easy way of setting up a permanent jupyter server on a remote server and forwarding it to your local computer. It also provides a class to generate sbatch scripts and execute them.

Language: Python - Size: 59.6 KB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

bio-phys/asyncmd

asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.

Language: Python - Size: 952 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 3

neurokernel/gpu-cluster-config

How to Configure a GPU Cluster Running Ubuntu Linux

Size: 14.6 KB - Last synced: 2 days ago - Pushed: over 7 years ago - Stars: 50 - Forks: 12

mil-ad/stui

A Slurm dashboard for the terminal.

Language: Python - Size: 1.37 MB - Last synced: about 13 hours ago - Pushed: 2 months ago - Stars: 71 - Forks: 11

JBris/slurm-rest-api-docker

A test Docker build for SLURM with the SLURM REST API configured.

Language: Dockerfile - Size: 72.3 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

stevekm/slurm-cluster

Methods for building & deploying SLURM cluster from source code

Language: Ruby - Size: 33.2 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

giovtorres/slurm-docker-cluster

A Slurm cluster using docker-compose

Language: Dockerfile - Size: 22.5 KB - Last synced: 3 months ago - Pushed: 4 months ago - Stars: 248 - Forks: 152

lucasroges/slurm-swarm-cluster

Este repositório contém uma versão baseada em contêineres do gerenciador de recursos Slurm, para execução utilizando o Docker Swarm.

Language: Shell - Size: 8.79 KB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 1

caravagnalab/easypar

Easy parallelisation of R computations.

Language: R - Size: 1.3 MB - Last synced: 3 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

andthum/hpc_submit_scripts

Slurm job scripts to run and analyze molecular dynamics simulations on high performance computers

Language: Shell - Size: 2.24 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0

dcfidalgo/slurm_sweeps

A simple tool to perform parameter sweeps on SLURM clusters.

Language: Python - Size: 285 KB - Last synced: 2 months ago - Pushed: 5 months ago - Stars: 2 - Forks: 1

hpc/hpc-collab

This project provides provisioned HPC cluster models using underlying virtualization mechanisms.

Language: Shell - Size: 184 MB - Last synced: 15 days ago - Pushed: over 1 year ago - Stars: 10 - Forks: 7

chaudharysurya14/Slurm-HPC_Resource_management

Slurm is an open-source, highly configurable job scheduler for managing and optimizing the workload on HPC clusters. It provides a framework for job submission, resource allocation, and job tracking, enabling efficient utilization of computing resources.

Size: 588 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

kkrings/pyssub

Slurm job submission in Python

Language: Python - Size: 94.7 KB - Last synced: about 2 months ago - Pushed: about 3 years ago - Stars: 4 - Forks: 1

cfultz/alma8-warewulf-template-ohpc

An AlmaLinux 8 Warewulf template for OpenHPC Warewulf

Language: Shell - Size: 2.93 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

jong980812/Slurm_MultiNode_DDP

This helps you to submit job with multinode & multgpu in Slurm in Torchrun

Language: Shell - Size: 214 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 4 - Forks: 0

AleTM1/KMean_OpenMP

K-Mean C++ parallel implementation with OpenMP

Language: C++ - Size: 3.93 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

subhc/susbot

Slack bot to interface with Slurm and other utlilities

Language: Python - Size: 50.8 KB - Last synced: 5 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

ssapir/AnalysisPipelineInfra

Common functions and infrastructure built during my phd projects

Language: Python - Size: 16.6 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

situpf/smem

Monitoring SLURM

Language: PHP - Size: 29.3 KB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0

Manninm/MiKTMCSnakemakePipeline

Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows

Language: R - Size: 8.54 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

cloudgear-io/azure-bigcompute

:star: :penguin: :new: GPU Sku usage for Ubuntu 16.04-LTS and CentOS 7.4 , Standard Open Source Scheduler Deployments Torque, SLURM, PBSPro for HPC Skus for CentOS 7.4-HPC with OMS. This is presently on the GAed CentOS-HPC A9/H16R/H16MR and GPU NC6/NC12/NC24 . Latest Docker CE and nvidia-docker present in all. Updating for DIGITS for 2.0 on nvidia-runtime

Language: Shell - Size: 3.37 MB - Last synced: 8 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 2

mercanca/spart

spart: a user-oriented partition info command for slurm

Language: C - Size: 172 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 18 - Forks: 4

stanfordmlgroup/LaunchPad

LaunchPad is a light-weighted Slurm job launcher designed for hyper-parameter search.

Language: Python - Size: 74.2 KB - Last synced: 26 days ago - Pushed: about 1 year ago - Stars: 11 - Forks: 1

lordzuko/probabilistic-deep-learning

Code for various probabilistic deep learning models

Language: Jupyter Notebook - Size: 111 KB - Last synced: 9 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

zthart/csh-slurmguide

A quick and dirty setup guide for adding and troubleshooting nodes in the CSH Compute Cluster

Language: TeX - Size: 252 KB - Last synced: 9 months ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0

tamhinsf/Slurm4Azure

Deploy SLURM Workload Manager on Ubuntu to Microsoft Azure

Language: Shell - Size: 45.9 KB - Last synced: 9 months ago - Pushed: about 5 years ago - Stars: 4 - Forks: 3

ackdav/tf-sparql

ML model to predict SPARQL query execution times from time series data

Language: Python - Size: 391 MB - Last synced: 9 months ago - Pushed: almost 7 years ago - Stars: 5 - Forks: 0

ajay-mk/Jupyter-in-SLURM

Bash scripts which will help you in running JupyterLab or Jupyter Notebooks in compute nodes of HPC Clusters

Language: Shell - Size: 11.7 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 0

zhonger/docker-slurm

A dockerlized image for slurm

Language: Dockerfile - Size: 7.81 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

Bobobo-bo-Bo-bobo/prometheus-slurm-exporter

Export SLURM job and partition metrics to Proemtheus

Language: Rust - Size: 173 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 0

stevekm/slurm-cluster-vagrant Fork of lonsbio/slurm-cluster-vagrant

Vagrant setup for a slurm cluster

Language: Makefile - Size: 743 KB - Last synced: 4 days ago - Pushed: over 4 years ago - Stars: 4 - Forks: 8

JamesOwers/cluster-scripts Fork of cdt-data-science/cluster-scripts

A collection of useful scripts, templates, and examples for clusters using SLURM https://slurm.schedmd.com/

Language: Shell - Size: 1.19 MB - Last synced: 10 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

Hi-Im-Simon/Slurm-cluster-configuration

Step by step configuration for a basic Slurm cluster

Size: 88.9 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

JBris/slurm_parallel_file_creation_test

Testing parallel file creation using SLURM

Language: R - Size: 1000 Bytes - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

sjaenick/slurmstats

Job array statistics for SLURM-based HPC clusters

Language: Perl - Size: 3.91 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

dooglz/slurm_docker

Minimum working example of a slurm cluster, using LDAP and Docker

Language: Dockerfile - Size: 36.1 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 4 - Forks: 2

manorom/wormulon

Control your SLURM jobs via SSH using Python (WORK IN PROGRESS)

Language: Python - Size: 9.77 KB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 1 - Forks: 0

refraction-ray/hpc-build-ansible-playbooks

Basically all ingredients for building HPC style clusters are here.

Language: Python - Size: 92.8 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 10 - Forks: 1

althonos/smatrix

Not the slurm job dispatcher you need, but the one you deserve.

Language: Python - Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 1

SquareFactory/spank_report 📦

A SPANK plugin to report using the Trackable Ressources (TRES) Billing for Slurm.

Language: C - Size: 104 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

luptior/pysbatch

Submit slurm cluster job(Sbatch) inside python and avoid shell script. Submission cmd can be customized to add more options.

Language: Python - Size: 51.8 KB - Last synced: 16 days ago - Pushed: over 3 years ago - Stars: 13 - Forks: 6

uf-icbr-bioinformatics/submit

Generalized submit command for slurm / moabs

Language: Python - Size: 49.8 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 3 - Forks: 1

mperov/slurmScripts

This scripts simplify to control slurm cluster.

Language: Shell - Size: 1000 Bytes - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

leebardon/easy_slurm

Instantly generate Slurm scripts with the correct module and package dependancies.

Language: Shell - Size: 109 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

eriksjolund/slurm-container-cluster Fork of giovtorres/slurm-docker-cluster

Container-based Slurm cluster with support for running on multiple ssh-accessible computers. Currently it is based on podman, systemd, norouter and sshocker (sshfs).

Language: Shell - Size: 131 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 16 - Forks: 2

mila-iqia/mila_datamodules

Efficient Datamodules Customized for the Mila / CC clusters

Language: Python - Size: 688 KB - Last synced: about 1 month ago - Pushed: 10 months ago - Stars: 4 - Forks: 3

SupreethRao99/slurmy

template scripts and notes for using SLURM on Nvidia DGX GPU cluster

Size: 12.7 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

scicore-unibas-ch/ansible-playbook-scicore-courses-cloud

Ansible playbooks to boot resources in the cloud for the sciCORE courses

Language: Jinja - Size: 208 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 3

bencardoen/singularity_slurm_cuda

Example on how to get started with Singularity and CUDA on a SLURM cluster

Language: Shell - Size: 214 KB - Last synced: 9 months ago - Pushed: 12 months ago - Stars: 3 - Forks: 0

bullet-physics-playground/demo-povay-slurm

POV-Ray on Slurm Workload Manager demo scripts.

Language: POV-Ray SDL - Size: 269 KB - Last synced: about 2 months ago - Pushed: about 2 years ago - Stars: 4 - Forks: 1

thanhleviet/ansible-slurm-climb

Ansible playbook for installing SLURM based cluster on CLIMB (Cloud Infrastructure for Microbial Bioinformatics)

Language: Python - Size: 252 KB - Last synced: 7 months ago - Pushed: about 6 years ago - Stars: 5 - Forks: 0

MikeDacre/fyrd

Submit functions and shell scripts to torque and slurm clusters or local machines using python.

Language: Python - Size: 6.55 MB - Last synced: about 2 months ago - Pushed: over 3 years ago - Stars: 21 - Forks: 8

metavannier/metatranscriptomics-bulkrnaseq_workflow

This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.

Language: Python - Size: 91.8 KB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 2

walachey/slurmhelper

A small helper tool to manage SLURM job creation / submission in a more pythonic way.

Language: Python - Size: 35.2 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1

luise15/patagon

Scripts explorar uso Cluster UACH Patagon, Aprendiendo a usar Docker, Slurm y KERAS con GPU

Language: Jupyter Notebook - Size: 16.6 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

hokiegeek2/slurm-docker-cluster Fork of giovtorres/slurm-docker-cluster

A Slurm cluster using docker-compose

Language: Dockerfile - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

SchapplM/matlab_pbs_transfer

Upload computing jobs from a Matlab client to a PBS cluster

Language: MATLAB - Size: 58.6 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

gartician/slurm-snakemake-profile

Generic Snakemake profile to set up SLURM integration

Language: Python - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

projectRaspberry/wipi

HPC with Raspberry Pi - This project helps people to build their small-scale HPC clusters with RaspberryPis using a simple approach.

Language: Shell - Size: 5.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 1

refraction-ray/vm-cluster

Bash scripts to build VM slurm cluster via virsh interface

Language: Shell - Size: 28.3 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1

S-u-m-u-n/hpc_user_config

My dotfiles for hpc clusters.

Language: Shell - Size: 17.6 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 1 - Forks: 0

COMOKIT/COMOKIT-HPC

🧰 ToolKit to launch COMOKIT on HPC

Language: Python - Size: 550 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

kwaszczuk/slurm-docker

Convenient Slurm cluster setup with Docker for both development and scheduling usage.

Language: Dockerfile - Size: 5.9 MB - Last synced: 11 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

marcosdelcueto/colaSlurm

Simple bash script to get useful information from slurm queue system

Language: Shell - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

ashishsinghucd/sonic_testing

Language: Python - Size: 6.84 KB - Last synced: 12 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

tAndreani/DNA-Demethylation-Gadd45

Demethylation mediated by Gadd45 proteins

Language: Shell - Size: 158 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1

huntdatacenter/charm-slurm-node

Slurm Node Charm

Language: Python - Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 1 - Forks: 0

huntdatacenter/charm-slurm-controller

Slurm Controller Charm

Language: Python - Size: 33.2 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 1 - Forks: 1

adiamb/EXOME_1000G_WF

Language: Shell - Size: 36.1 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 0 - Forks: 0