GitHub topics: sequencing-data
pathoplexus/pathoplexus
An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
Language: MDX - Size: 9.83 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 36 - Forks: 2
pedricolino/cnakepit
A Snakemake pipeline for copy number variant calling without normal tissue samples
Language: Python - Size: 3.31 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0
omicsEye/deepbreaks
deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from a population.
Language: Jupyter Notebook - Size: 138 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 10 - Forks: 3
tobiasrausch/wally
Wally: Visualization of aligned sequencing reads and contigs
Language: C++ - Size: 7 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 114 - Forks: 6
ArcInstitute/ScreenPro2
Flexible analysis of high-content CRISPR screening
Language: Python - Size: 3.53 MB - Last synced at: 26 days ago - Pushed at: about 1 month ago - Stars: 29 - Forks: 6
bcgsc/ntRoot
🌳 Human ancestry inference from genomic data
Language: Python - Size: 84.2 MB - Last synced at: 11 days ago - Pushed at: about 2 months ago - Stars: 6 - Forks: 0
IBCHgenomic/readanalyzer
readanalyzer for miseq, nextseq, novase and longreads
Language: Rust - Size: 3.18 MB - Last synced at: 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
sciencegenome/genome-longread-count
datastructure rustlang faster iteration for genome, short and long reads
Language: Rust - Size: 7.38 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
andrewdavidsmith/adapto-rs
Remove adaptors from short-read bisulfite sequencing data (coded in rust)
Language: Rust - Size: 72.3 KB - Last synced at: about 2 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
Ch-Jameel/Time-series-Forcasting-Using-LSTM
Stock Price Forcasting Using LSTM
Size: 1.17 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0
seq-jchoi-bio/seq-portfolio
Sequencing Techniques Portfolio
Size: 4.78 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
gozdekb/gozdekb
Basic packages for amplicon-based sequencing analysis.
Size: 8.79 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
iomyaki/Anopheles-assembly
Language: Python - Size: 1.95 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
JazzEd-EdTech/cromwell Fork of broadinstitute/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Language: Scala - Size: 40.5 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
ggirelli/GPSeq-RadiCal
R script for fast and streamlined Radiality Calculation from GPSeq data.
Language: R - Size: 50.8 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
