Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: ancestry

Repositories

bartfeenstra/betty

Betty visualizes and publishes your family history by building interactive, encyclopedia-like genealogy websites out of your Gramps and GEDCOM family trees

Language: Python - Size: 4.59 MB - Last synced: about 4 hours ago - Pushed: about 16 hours ago - Stars: 64 - Forks: 11

TreeTime is a data organisation, management and analysis tool. A tree is a hierarchical structure that arranges information in units and sub-units. TreeTime uses linked trees (one data item can be part of different distinct trees) to store and organise any general purpose data.

Language: Python - Size: 1.57 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 39 - Forks: 5

bcgsc/ntRoot

🌳 Human ancestry inference from genomic data

Language: Python - Size: 21.6 MB - Last synced: 1 day ago - Pushed: 1 day ago - Stars: 2 - Forks: 0

ClosureTree/closure_tree

Easily and efficiently make your ActiveRecord models support hierarchies

Language: Ruby - Size: 1.24 MB - Last synced: 1 day ago - Pushed: 2 months ago - Stars: 1,823 - Forks: 240

nigelhorne/ged2site

Create a family tree website from a Gedcom file

Language: Perl - Size: 225 MB - Last synced: about 17 hours ago - Pushed: 3 days ago - Stars: 34 - Forks: 4

sanjaynagi/rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

Language: Jupyter Notebook - Size: 99.6 MB - Last synced: 2 days ago - Pushed: 6 days ago - Stars: 17 - Forks: 6

brentp/peddy

genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

Language: Jupyter Notebook - Size: 39.3 MB - Last synced: about 16 hours ago - Pushed: almost 3 years ago - Stars: 127 - Forks: 38

dalpo/rails_admin_nestable

RailsAdmin drag & drop custom action sorting list and tree (using the Ancestry gem) :gem:

Language: JavaScript - Size: 314 KB - Last synced: 12 days ago - Pushed: about 1 year ago - Stars: 104 - Forks: 71

impworks/bonsai

Self-hosted family wiki engine / photoalbum

Language: C# - Size: 3.71 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 196 - Forks: 23

MGeurts/genealogy

Genealogy is a free and open-source (family tree) application to record family members and their relationships, build with PHP (Laravel 11).

Language: PHP - Size: 12.1 MB - Last synced: 18 days ago - Pushed: 19 days ago - Stars: 68 - Forks: 13

Tom-Jenkins/mapmixture

An R package and web app for spatial visualisation of admixture on a projected map

Language: R - Size: 25 MB - Last synced: 18 days ago - Pushed: 20 days ago - Stars: 31 - Forks: 5

Serg-Norseman/GEDKeeper

GEDKeeper - program for work with personal genealogical database

Language: C# - Size: 60.9 MB - Last synced: 30 days ago - Pushed: 30 days ago - Stars: 137 - Forks: 40

joeyaurel/python-gedcom Fork of madprime/python-gedcom

Python module for parsing, analyzing, and manipulating GEDCOM files

Language: Python - Size: 562 KB - Last synced: 17 days ago - Pushed: 4 months ago - Stars: 146 - Forks: 37

NCBI-Hackathons/UPWARD

UPWARD: Uniting People Working Against Rare Diseases

Language: PHP - Size: 16.5 MB - Last synced: 16 days ago - Pushed: over 4 years ago - Stars: 6 - Forks: 1

plashchynski/awesome-genetics

A curated list of awesome personal genomics software, libraries, and educational resources.

Size: 40 KB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 109 - Forks: 7

haplotype/ELAI

Efficient Local Ancestry Inference

Language: C++ - Size: 4.51 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 8 - Forks: 1

apriha/lineage

tools for genetic genealogy and the analysis of consumer DNA test results

Language: Python - Size: 1.05 MB - Last synced: 27 days ago - Pushed: about 1 month ago - Stars: 140 - Forks: 25

C3n7ral051nt4g3ncy/Obsidian

Obsidian Ancestry Investigations

Size: 14.6 KB - Last synced: about 15 hours ago - Pushed: over 1 year ago - Stars: 17 - Forks: 1

arvkevi/ezancestry

Easy genetic ancestry predictions in Python

Language: Jupyter Notebook - Size: 24.9 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 52 - Forks: 11

AlexanderWillner/kingraph Fork of vabene1111/kingraph

Plots family trees using JavaScript and Graphviz

Language: JavaScript - Size: 906 KB - Last synced: about 15 hours ago - Pushed: over 1 year ago - Stars: 50 - Forks: 9

AI-sandbox/gnomix

A fast, scalable, and accurate local ancestry method.

Language: Python - Size: 161 MB - Last synced: 21 days ago - Pushed: about 2 months ago - Stars: 64 - Forks: 12

TheSergeyPixel/Diablo_G25

Diablo G25 - is a tool for conversion of VCF file to 23AndMe format and calculation of admixture scores from it.

Language: Python - Size: 15.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

asiniy/ecto_materialized_path

Tree structure & hierarchy for ecto models

Language: Elixir - Size: 46.9 KB - Last synced: about 7 hours ago - Pushed: over 2 years ago - Stars: 62 - Forks: 18

wvictor14/planet

For inferring ancestry, gestational age, and cell type proportions from placental DNA methylation array data

Language: R - Size: 6.46 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 4 - Forks: 1

CVUA-RRW/taxidTools

Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files

Language: Python - Size: 1.14 MB - Last synced: 7 days ago - Pushed: over 2 years ago - Stars: 0 - Forks: 1

dwdyer/familytree

A very incomplete Django-based genealogy web app.

Language: Python - Size: 341 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 52 - Forks: 20

zven21/ancestry

The tree structure implementations for Elixir Ecto.

Language: Elixir - Size: 83 KB - Last synced: 4 days ago - Pushed: over 2 years ago - Stars: 27 - Forks: 4

bartfeenstra/ancestry

The Betty configuration for https://ancestry.bartfeenstra.com/

Language: Python - Size: 287 KB - Last synced: 16 days ago - Pushed: 16 days ago - Stars: 2 - Forks: 0

arrogantrobot/23andme2vcf

convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf

Language: Perl - Size: 29.1 MB - Last synced: 9 days ago - Pushed: over 4 years ago - Stars: 94 - Forks: 30

hannesgislason/wg-project

Bioinformatic R/Rmd-code for scientific paper published in BMC Genomics

Language: R - Size: 57.6 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

kennethreitz/context

Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.

Language: HTML - Size: 129 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 76 - Forks: 8

tkchafin/FGTpartitioner

Parsimonious delimitation of large SNP datasets using the four gamete test

Language: Python - Size: 442 KB - Last synced: 6 months ago - Pushed: about 4 years ago - Stars: 4 - Forks: 0

Jukilum/ahnen.js

A set of javascript functions for interpreting Ahnentafel numbers for genealogy. Compatible with, but does not require Node.js.

Language: JavaScript - Size: 56.6 KB - Last synced: 1 day ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

cqcore/Ancestry-Genealogy-OSINT

Find out more by looking at the past and the new era of genealogy.

Size: 19.5 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 5 - Forks: 0

gear-genomics/ancient

Ancestry inference with convolutional neural networks

Language: Vue - Size: 56.2 MB - Last synced: 18 days ago - Pushed: 20 days ago - Stars: 8 - Forks: 2

lukecfairchild/Ancestry-Dark-Mode

Language: JavaScript - Size: 5.86 KB - Last synced: 8 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

plantimals/2vcf

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

Language: Go - Size: 25.2 MB - Last synced: 6 months ago - Pushed: over 4 years ago - Stars: 47 - Forks: 4

ahmedmoustafa/genetic-ancestry

Genetic Ancestry

Language: Jupyter Notebook - Size: 13.5 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

GregLevenhagen/ancestry-power-user

The project is the source for a browser extension to assist Ancestry.com power users, saving them work and time.

Language: JavaScript - Size: 35.2 KB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

KrasnitzLab/RAIDS

Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms

Language: R - Size: 7.11 MB - Last synced: about 2 hours ago - Pushed: 7 months ago - Stars: 5 - Forks: 4

plashchynski/dna-raw-tools

Tools to work with 23andMe and AncestryDNA raw files

Language: Ruby - Size: 9.77 KB - Last synced: 14 days ago - Pushed: over 6 years ago - Stars: 10 - Forks: 2

karlinarayberinger/karbytes_23AndMe_Ancestry_Data

This repository contains web page source code and media files which constitute (some of) the intellectual property encapsulated by the website named Karbytes For Life Blog dot WordPress dot Com.

Size: 7.06 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

tanoramb/Ancestry

Pipeline to calculate local ancestries using RFMix 1.5 or RFMix 2.0 and Beagle5 or ShapeIT

Language: Shell - Size: 45.9 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

acostauribe/TANGL

Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"

Language: Shell - Size: 1.96 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 2

laura-budurlean/PCA-Ethnicity-Determination-from-WGS-Data

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

Language: Shell - Size: 42 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

wegene-llc/radmixture

an R package for ancestry analysis

Language: R - Size: 54.6 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 34 - Forks: 19

hagax8/ancestry_viz

GTM and t-SNE classification and clustering of 1000 Genomes Project populations

Language: Python - Size: 153 KB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 7 - Forks: 0

rokkuran/notebooks

Miscellaneous analysis and simulation notebooks.

Language: Jupyter Notebook - Size: 4.04 MB - Last synced: about 2 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 0

noahbjohnson/ancestry-source-downloader

Language: Python - Size: 46.9 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

fret2buzz/family-tree-html

Generate a family tree or org chart from csv file to html.

Language: JavaScript - Size: 64.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 7 - Forks: 2

mathilab/PRS_Height_Admixed_Populations

Investigating the lack of transferability of polygenic risk scores for height in admixed individuals, using summary statistics from UK Biobank (British) individuals and testing on individuals with admixed ancestry from the Jackson Heart Study, Women's Health Initiative, and Health and Retirement Study.

Language: R - Size: 101 MB - Last synced: 9 months ago - Pushed: over 3 years ago - Stars: 2 - Forks: 3

jgeofil/mycorrhiza-algorithm

Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data

Language: Python - Size: 15 MB - Last synced: 29 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

GirkovArpa/region-relatives-4-23andme

Chrome extension for 23andMe to reveal how many relatives you have per region.

Language: JavaScript - Size: 409 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

JazzEd-EdTech/action-build Fork of snapcore/action-build

A Github action for building Snapcraft projects

Language: JavaScript - Size: 517 KB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

Related Keywords

ancestry 72 genealogy 14 dna 11 23andme 11 family-tree 11 genomics 10 python 8 pedigree 5 genome 5 ancestrydna 5 admixture 5 gedcom 5 genetics 5 machine-learning 4 family 4 geneology 4 vcf 4 tree 4 population-genetics 4 rails 4 family-history 4 ruby 4 bioinformatics 4 ancestry-research 3 myheritage 3 ancestry-inference 3 gedcom-files 3 genotype 3 ecto 3 elixir 3 inference 2 t-sne 2 rna-seq 2 gtm 2 django 2 clustering 2 annotations 2 perl 2 ruby-on-rails 2 betty 2 lineage 2 dimensionality-reduction 2 population-structure 2 r 2 genealogical-data 2 genes 2 ncbi 2 docker 2 health 2 whole-genome-sequencing 2 sequencing 2 gwas 2 promethease 2 bootstrap4 2 ethnicity-analysis 2 1000genomes 2 data 2 calendar 2 tree-structure 2 css 2 principal-component-analysis 2 pca 2 ancestry-estimation 2 regions 1 extension 1 rna-sequencing 1 chrome 1 structure 1 dna-sequences 1 splitstree 1 random-forests 1 phylogenetics 1 r-package 1 relatives 1 aws-ami 1 r-language 1 exome-sequencing 1 cancer-genomics 1 single-nucleotide-polymorphisms 1 aws-cli 1 aws-cloudformation 1 aws-ec2 1 cisco-dna-center 1 familysearch 1 photo-album 1 ethnicity-prediction 1 ethnicity-classifier 1 ngs 1 wgs 1 ethnicity 1 generative-topographic-mapping 1 phasing 1 pca-analysis 1 identical-ancestors 1 most-recent-common-ancestor 1 simulation 1 scraping 1 ibd 1 shapeit2 1 rfmix 1