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GitHub / brentp / peddy
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brentp%2Fpeddy
Stars: 127
Forks: 38
Open Issues: 27
License: mit
Language: Jupyter Notebook
Repo Size: 39.3 MB
Dependencies:
13
Created: almost 9 years ago
Updated: 21 days ago
Last pushed: almost 3 years ago
Last synced: 9 days ago
Topics: ancestry, bioinformatics, genomics, genotype, pedigree, vcf
Funding links: https://github.com/sponsors/brentp
Files
Dependencies
- sphinx *
- nose * development
- click *
- coloredlogs *
- cython *
- cyvcf2 >=0.5.3
- matplotlib >=1.5.0
- networkx *
- numpy *
- pandas *
- scikit-learn *
- seaborn *
- toolshed *