SchlossLab/Barron_IBD-CDI_mBio_2022 📦

ML analysis to predict C. difficile colonization in fecal communities of IBD & control mice.

Language: R - Size: 25.5 MB - Last synced: 9 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

omicsedge/selphi

weighted-PBWT genotype imputation algorithm

Language: Python - Size: 456 KB - Last synced: 14 days ago - Pushed: 14 days ago - Stars: 1 - Forks: 0

hringbauer/ancIBD

Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.

Language: Jupyter Notebook - Size: 88.9 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 5 - Forks: 1

Paleogenomics/IBDGem

Program for positive genetic identification and IBD detection from low-coverage sequencing data

Language: C - Size: 4.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

ElDeveloper/dogs

Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"

Language: Jupyter Notebook - Size: 55.2 MB - Last synced: 7 months ago - Pushed: almost 6 years ago - Stars: 10 - Forks: 4

Ural-Yunusbaev/bgl41.to.emi

Beagle to EMI converter

Language: R - Size: 3.1 MB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0

alethere/SmoothDescent

Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.

Language: R - Size: 6.35 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 3 - Forks: 0

variani/lme4qtl

Mixed models @lme4 + custom covariances + parameter constraints

Language: R - Size: 388 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 44 - Forks: 8

hunterhn/recuperar-datos-desde-archivos-frm-ibd-de-mysql

Pasos para recuperar datos desde archivos .frm y .ibd de MySql en Español.

Language: TSQL - Size: 5.86 KB - Last synced: 7 months ago - Pushed: about 4 years ago - Stars: 4 - Forks: 0

SherineAwad/Kinship

Quick analysis for kinship, relatedness, IBS, IBD

Language: Python - Size: 15.6 KB - Last synced: 8 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

EOosterhout/Chem-Food-IBD

Language: R - Size: 26.3 MB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

acostauribe/TANGL

Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"

Language: Shell - Size: 1.96 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 2

nathansam/tofameta

R scripts/data for Lucaciu & Constantine-Cooke et al. Real-world experience with tofacitinib in ulcerative colitis - a systematic review and meta-analysis of observational studies.

Language: R - Size: 741 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

a-thind/ideogram

HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js

Language: R - Size: 104 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

a-thind/IBDVar

A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.

Language: Shell - Size: 4.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0

openb-io/ibd-pipeline

convert genotype array output into annotated IBD segments

Language: Shell - Size: 22.5 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 0

iArpanK/RS-Screener

Screener for Stocks with Relative Strength New Highs & New Highs before Price, sorted by RS Score

Size: 130 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 10 - Forks: 2

davidzhao1015/zero-inflated-microbiome-model

R pipeline to build models specializing on zero-inflated microbiome data

Language: HTML - Size: 1.12 MB - Last synced: 3 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

joshuaharris12/ibd-mobile-app

A cross-platform mobile application to aid patients in their self-management of Inflammatory Bowel Disease.

Language: JavaScript - Size: 2.32 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

Biometris/statgenIBD

See https://biometris.github.io/statgenIBD for a full description

Language: R - Size: 11.1 MB - Last synced: 5 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

jranaraki/IBDgenes

MATLAB implementation of perturbation based feature selection for finding associated genes to Inflammatory Bowel Disease

Language: MATLAB - Size: 9.65 MB - Last synced: 12 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

denisergashbaev/crohns_disease_research

Collection of personal stories and scientific evidence about people who have been able to bring their Crohn's disease to sustained remission without using western medicine

Size: 3.91 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

DariiaVyshenska/IBDteam1

MB599 class, spring 2018, group1, stomach microbiota in IBD

Language: R - Size: 1.57 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

gmagoon/bIBD

efficient, accurate, and scalable IBD segment detection with unphased genotype data

Language: TeX - Size: 2.63 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0