BioinformaticsOnLine/CHITRA

A visualization tool for studying chromosomal rearrangements through interactive synteny block analysis and chromosome breakpoint mapping.

Language: TypeScript - Size: 95.9 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 2

Serg-Norseman/GKGenetix

Simple genetic data analysis for GEDKeeper

Language: C# - Size: 12.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 2

apriha/lineage

tools for genetic genealogy and the analysis of consumer DNA test results

Language: Python - Size: 1.11 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 169 - Forks: 26

apriha/snps

tools for reading, writing, merging, and remapping SNPs

Language: Python - Size: 2.05 MB - Last synced at: 5 days ago - Pushed at: 6 months ago - Stars: 109 - Forks: 18

tvmendonca/iRheoCStretch

An app to extract complex viscoelasticity from optical tweezer stretch-strain rheology measurements of chromosomes and other single molecules

Language: MATLAB - Size: 2.48 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

monarch-initiative/monochrom

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Language: Python - Size: 7.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 13 - Forks: 2

open2c/polychrom

Chromosome polymer simulations and in silico capture experiments

Language: Python - Size: 19.7 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 48 - Forks: 16

lpryszcz/HiCembler

Assembler for HiC data

Language: Python - Size: 156 KB - Last synced at: 3 months ago - Pushed at: almost 7 years ago - Stars: 5 - Forks: 0

beigecap/tRNA_like_sequences

Research work on the search for tRNA-like sequences in the human genome. National Research Nuclear University MEPhI (Moscow Engineering Physics Institute)

Language: C++ - Size: 9.53 MB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

mpicbg-csbd/napari-kics

A plugin to estimate chromosome sizes from karyotype images.

Language: Python - Size: 8.15 MB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 0

estebanpw/chromeister

A dotplot generator for large chromosomes

Language: C - Size: 927 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 38 - Forks: 4

nthomasCUBE/Gexplora

Gexplora - user-interface to analyse genomic elements along chromosomes

Language: Python - Size: 43.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0

keivan-amini/Node2VecHiC

Node2Vec and PCA on Hi-C matrices for detecting chromosome translocations.

Language: Jupyter Notebook - Size: 5.36 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0

yulvil/chromosome-browser

Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme

Language: HTML - Size: 153 KB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 22 - Forks: 2

pprattis/Chimeric-Alignment-problem

A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.

Language: Python - Size: 3.91 KB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

lukasuz/Banding-Pattern-Extraction

Banding pattern extraction, and banding pattern segmentation mask generation for stained banded chromosome images.

Language: Python - Size: 456 KB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 11 - Forks: 4

marccasian/KaryML-Framework

Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.

Language: Python - Size: 10.2 MB - Last synced at: almost 2 years ago - Pushed at: about 5 years ago - Stars: 10 - Forks: 0

a-thind/ideogram

HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js

Language: R - Size: 104 KB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0

AliMarouf97/GeneticAlgorithm

The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.

Language: C++ - Size: 119 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 0

christopher-hakkaart/GenomeFiles

Meta-chromosome genome files and scripts

Size: 325 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

egonw/wikipathways-chromosomes

Mapping WikiPathways to chromosomes

Language: HTML - Size: 15.6 KB - Last synced at: about 2 months ago - Pushed at: over 7 years ago - Stars: 3 - Forks: 2

jnarayan81/ambigram

Evolutionary Chromosome Breakpoints Validator

Language: Perl - Size: 38.7 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2

semboko/RadialProfile

Measures the integral radial density of a fluorescent signal in a nucleus of any shape

Language: Python - Size: 3.61 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

pprattis/chromosome-last-nucleotide-game

A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.

Language: Python - Size: 23.4 KB - Last synced at: 11 days ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

pprattis/chromosome-last-random-nucleotide-game

A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.

Language: Python - Size: 41 KB - Last synced at: 21 days ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

pprattis/sequence-global-alignment-with-unknown-nucleotides

A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.

Language: Python - Size: 10.7 KB - Last synced at: 5 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 2

RRafiee/MuTect1

Language: R - Size: 2.3 MB - Last synced at: almost 2 years ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0