GitHub topics: loop-extrusion
Nuwah12/CodeWorkbench
Analysis scripts and other code written during my time at Penn.
Language: Jupyter Notebook - Size: 45.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0
paulsengroup/StripePy
StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning
Language: Python - Size: 1.31 MB - Last synced at: 1 day ago - Pushed at: 5 days ago - Stars: 6 - Forks: 3
open2c/polychrom
Chromosome polymer simulations and in silico capture experiments
Language: Python - Size: 19.7 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 48 - Forks: 16
paulsengroup/modle
High-performance stochastic modeling of DNA loop extrusion interactions
Language: C++ - Size: 64.7 MB - Last synced at: 2 months ago - Pushed at: 9 months ago - Stars: 17 - Forks: 2
bchan-4/LE_single_chain
Code to model active loop extrusion on chromatin using hybrid MD-MC.
Language: C - Size: 200 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
polly-code/lammps_le
Loop extrusion module with LAMMPS
Language: C++ - Size: 113 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 0
