GitHub topics: hichip
Nuwah12/CodeWorkbench
Analysis scripts and other code written during my time at Penn.
Language: Jupyter Notebook - Size: 45.9 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 1 - Forks: 0
YaqiangCao/cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
Language: Python - Size: 251 MB - Last synced at: 20 days ago - Pushed at: 3 months ago - Stars: 47 - Forks: 8
aryeelab/hichipper
A preprocessing and QC pipeline for HiChIP data
Language: HTML - Size: 224 MB - Last synced at: 26 days ago - Pushed at: almost 3 years ago - Stars: 38 - Forks: 14
OpenOmics/HiIP
An awesome Hi-C + ChIP (HiChIP) sequencing pipeline.
Language: Python - Size: 577 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
ChenfuShi/HiChIP_peaks
A tool to analyse HiChIP data
Language: HTML - Size: 95.8 MB - Last synced at: 29 days ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 4
pmarrapese/iot
Resources for IoT security research
Language: Python - Size: 10.7 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 61 - Forks: 23
gifford-lab/spatzie Fork of jhammelman/spatzie
Identification of enriched motif pairs from chromatin interaction data
Language: R - Size: 35.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
jhammelman/spatzie
Identification of enriched motif pairs from chromatin interaction data
Language: R - Size: 35.9 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 3
ay-lab/FitHiChIP
Statistically Significant loops from HiChIP data
Language: R - Size: 202 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 32 - Forks: 20
kkrismer/idr2d
Irreproducible discovery rate for genomic interaction data
Language: R - Size: 2.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 3
YaqiangCao/cLoops
Accurate and flexible loops calling tool for 3D genomic data.
Language: Python - Size: 464 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 103 - Forks: 48
GryderArt/AQuA-HiChIP
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
Language: R - Size: 729 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 11 - Forks: 4
