Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: identity-by-descent
sdtemple/isweep
Statistical inference of recent positive selection using IBD segments
Language: Python - Size: 791 MB - Last synced: 11 days ago - Pushed: 11 days ago - Stars: 3 - Forks: 0
jlc-christie/plink2merlin
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
Language: Python - Size: 18.6 KB - Last synced: 16 days ago - Pushed: about 5 years ago - Stars: 3 - Forks: 3
bguo068/ibdutils
A python package to facilitate identity-by-descent-based analysis
Language: Python - Size: 35.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0
bguo068/ishare
a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.
Language: Rust - Size: 328 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 0
rorycraig337/Chlamydomonas_reinhardtii_population_structure
Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"
Language: Perl - Size: 185 KB - Last synced: 7 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 1
hhuang2018/WGS_analysis
Exploratory analysis for donor-recipient whole genome sequences
Language: R - Size: 368 KB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
tbrunetti/GP3
GWAS Pre-Processing Pipeline
Language: Python - Size: 1.62 MB - Last synced: 5 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 1
bguo068/posseleff_simulations
Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
Language: Python - Size: 66.7 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 0
nickbrazeau/discent
Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates
Language: C++ - Size: 21.9 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 1 - Forks: 0
a-thind/IBDVar
A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.
Language: Shell - Size: 4.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
sunyatin/ASCEND
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
Language: Python - Size: 60 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 4 - Forks: 0
magnusdv/ibdsim2
Simulate patterns of DNA sharing between pedigree members
Language: R - Size: 9.28 MB - Last synced: 13 days ago - Pushed: 9 months ago - Stars: 4 - Forks: 2
magnusdv/ibdsim2-shiny
An online tool for simulating and visualising genetic sharing (identity-by-descent) between pedigree members. Powered by the R package ibdsim2.
Language: R - Size: 27.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
gmagoon/bIBD
efficient, accurate, and scalable IBD segment detection with unphased genotype data
Language: TeX - Size: 2.63 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0
