GitHub topics: gwas-pipeline

Repositories

cge-tubingens/IDEAL-GENOM

Package to perform a GWAS pipeline

Language: Jupyter Notebook - Size: 34.5 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 1 - Forks: 0

Kukuster/SumStatsRehab

GWAS summary statistics files QC tool

Language: Python - Size: 1.87 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 38 - Forks: 6

jcaperella29/GWAS-in-R

An R script for processing GWAS data.This produces a Manhattan plot , a cvs file of the results and a text file containing the SNPs met the p-value cutoff for genome wide significance

Language: R - Size: 5.86 KB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

statgen/zorp

A simple GWAS parser + CLI

Language: Python - Size: 454 KB - Last synced at: 17 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

alexliyihao/lpa-analysis

Code repo for research project with Dr. Gissette Soffer and Dr. Badri Vardarajan at Columbia Medical Center

Language: Python - Size: 61.1 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

statgen/pheweb-rg-pipeline

Genetic correlation calculation pipeline via summary statistics for PheWeb

Language: Nextflow - Size: 42 KB - Last synced at: 4 months ago - Pushed at: about 6 years ago - Stars: 13 - Forks: 2

statgen/localzoom

Make interactive LocusZoom plots from a local GWAS file

Language: Vue - Size: 5.76 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 4

akcorut/kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Language: Python - Size: 610 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 5

statgen/locuszoom-hosted

A web service to upload and share GWAS results with LocusZoom.js

Language: Python - Size: 3.42 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

AEstebanMar/DRAGGER

DAGGER: Drug repositioning by Analysis of GWAS and Gene Expression in R (maintained version). For publication version, see https://github.com/AEstebanMar/DAGGER-publication

Language: R - Size: 228 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

ShawnWx2019/emmax-pipeline

GWAS analysis process based on EMMAX software

Language: TeX - Size: 15.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0

snaketron/genphen

Tool for genome wide association studies with Bayesian inference and statistical learning

Language: R - Size: 49.5 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 2

tbrunetti/GP3

GWAS Pre-Processing Pipeline

Language: Python - Size: 1.62 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1

neurogenetics/GWAS-pipeline

This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.

Language: R - Size: 47.9 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 35 - Forks: 22

esohkevin/gwas-tips

tips and tricks in genome-wide association studies - a tutorial

Size: 19.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 8

pasted/gw_meta_analysis_low_muscle_strength 📦

Analysis code and processing stages for Genome-Wide meta-analysis of low grip strength in older people.

Language: R - Size: 26.4 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 0

DEMON-NEUROHACK/Challenge-1-London-Team-B-Genome-Wide-Association-Lovers-

We suggest a novel way of defining NCD as a continuous phenotype, and we employ a mixed linear model to account for pronounced population stratification in the South Asian sample, which is more diverse than European samples, for example.

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