Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: gwas-summary-statistics
mancusolab/FactorGo
Software to infer latent pleiotropic components from GWAS summary data
Language: Python - Size: 527 KB - Last synced: 23 days ago - Pushed: 24 days ago - Stars: 9 - Forks: 0
lcrawlab/i-LDSC
Code and simulations using interaction-LD score regression
Language: Python - Size: 15.4 GB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 8 - Forks: 1
statgen/locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Language: JavaScript - Size: 15.5 MB - Last synced: 14 days ago - Pushed: about 1 year ago - Stars: 148 - Forks: 28
MRCIEU/CAMERA Fork of yoonsucho/CAMERA
Mendelian Randomization approach using Cross Ancestral Model
Language: R - Size: 55 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0
statgen/locuszoom-hosted
A web service to upload and share GWAS results with LocusZoom.js
Language: Python - Size: 3.42 MB - Last synced: about 1 month ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
abought/zorp
A simple GWAS parser + CLI
Language: Python - Size: 454 KB - Last synced: 6 days ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0
statgen/localzoom
Make interactive LocusZoom plots from a local GWAS file
Language: Vue - Size: 5.76 MB - Last synced: about 1 month ago - Pushed: about 1 year ago - Stars: 6 - Forks: 4
mikelove/mrlocus
Older repo for MRLocus. See new website for software usage guide:
Language: R - Size: 3.31 MB - Last synced: 9 days ago - Pushed: 9 months ago - Stars: 16 - Forks: 8
SUwonglab/rss-net
Regression with Summary Statistics exploiting Network Topology.
Language: R - Size: 251 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 15 - Forks: 4
PriyaLakr/Manhattan-plot
Script for designing a manhattan plot.
Language: Python - Size: 237 KB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1
rivas-lab/degas-risk
Polygenic risk modeling with latent trait-related genetic components
Language: Jupyter Notebook - Size: 410 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
rivas-lab/ukbb-tools
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
Language: Jupyter Notebook - Size: 174 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 4 - Forks: 0
amorenooya/MasterThesis
R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".
Size: 37.1 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
Language: JavaScript - Size: 76.7 MB - Last synced: 8 days ago - Pushed: about 1 year ago - Stars: 8 - Forks: 4
RayDebashree/PLACO
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
Language: R - Size: 164 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 14 - Forks: 4
lightning-auriga/gwas-winners-curse
tool for probabilistic correction of Winner's Curse in two-stage GWAS
Language: R - Size: 1.86 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0
jiazhao97/BWMR
BWMR (Bayesian Weighted Mendelian Randomization)
Language: R - Size: 244 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 10 - Forks: 1
jinghuazhao/SUMSTATS
Format of GWAS summary statistics.
Language: Shell - Size: 49.8 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 10 - Forks: 2
stephenslab/rss
Regression with Summary Statistics.
Language: MATLAB - Size: 5.47 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 44 - Forks: 11
Kukuster/SumStatsRehab
GWAS summary statistics files QC tool
Language: Python - Size: 1.81 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 21 - Forks: 3
weinstockj/filter_somatic_variants_gwas_topmed
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.
Language: Go - Size: 4.88 KB - Last synced: 24 days ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
jinghuazhao/TWAS-pipeline
TWAS-pipeline
Language: Shell - Size: 2.06 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 10 - Forks: 6
garethmarkel/PRScs.jl
Julia implementation of Ge et al's PRScs
Language: Julia - Size: 35.2 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0
rivas-lab/mvpmm
MultiVariate Polygenic Mixture Model
Language: R - Size: 14.1 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 6 - Forks: 3
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
Language: C++ - Size: 4.55 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 8 - Forks: 5
RayDebashree/GxE
Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.
Language: R - Size: 33.2 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
adRn-s/ukbbgwas
Explore SNVs associated with any of UK BioBank Phenotypes, results were made publicly available by: http://www.nealelab.is/uk-biobank
Language: R - Size: 2.48 MB - Last synced: 12 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0
xiangzhu/rss-gsea
Full results to accompany Zhu and Stephens (2018).
Language: R - Size: 44.8 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 4 - Forks: 0
jinghuazhao/hess-pipeline
HESS pipeline
Language: Shell - Size: 30.4 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0
matthijsz/pysumstats
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
Language: Python - Size: 436 KB - Last synced: 30 days ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
weichengv/genee
A Recalibrated Hypothesis Test for SNP-Level Summary Statistics
Language: R - Size: 43.9 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0
