weinstockj/gwasplot

High Performance GWAS Plotting and Annotation

Language: R - Size: 36.5 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

statgen/locuszoom

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

Language: JavaScript - Size: 14.8 MB - Last synced at: 7 days ago - Pushed at: 10 days ago - Stars: 160 - Forks: 30

ht-diva/harmonization_pipeline

Language: Python - Size: 468 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

ht-diva/pqtl_pipeline_finemap

Fine mapping analysis within the pQTL pipeline project

Language: R - Size: 27.4 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

rivas-lab/ukbb-tools

Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

Language: Jupyter Notebook - Size: 174 MB - Last synced at: 29 days ago - Pushed at: almost 3 years ago - Stars: 11 - Forks: 0

Kukuster/SumStatsRehab

GWAS summary statistics files QC tool

Language: Python - Size: 1.87 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 38 - Forks: 6

siddhijain25/RSIDBuildTranslator

A tool for adding genomic IDs - rsIDS, or chromosome and positions from GRCh37 or GRCh38

Language: Python - Size: 47.7 MB - Last synced at: 22 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

matthijsz/pysumstats

Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.

Language: Python - Size: 436 KB - Last synced at: 6 days ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0

mancusolab/FactorGo

Software to infer latent pleiotropic components from GWAS summary data

Language: Python - Size: 532 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 13 - Forks: 0

garethmarkel/PRScs.jl

Julia implementation of Ge et al's PRScs

Language: Julia - Size: 35.2 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

lcrawlab/i-LDSC

Code and simulations using interaction-LD score regression

Language: Python - Size: 15.4 GB - Last synced at: 6 months ago - Pushed at: 11 months ago - Stars: 12 - Forks: 1

statgen/zorp

A simple GWAS parser + CLI

Language: Python - Size: 454 KB - Last synced at: 16 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

jinghuazhao/SUMSTATS

Format of GWAS summary statistics.

Language: Shell - Size: 49.8 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 11 - Forks: 2

gpmerola/GWAS-Summary-Report-Generator

This project is designed to read and analyze GWAS (Genome-Wide Association Study) summary statistics from a .gz file. It performs various statistical calculations and generates several plots to visualize the data.

Language: Python - Size: 142 KB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

gpmerola/GSEM-DualSub

A package to perform dual and single genomic subtraction through Genomic SEM.

Language: R - Size: 180 KB - Last synced at: 10 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0

mikelove/mrlocus

Older repo for MRLocus. See new website for software usage guide:

Language: R - Size: 3.31 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 8

naim-panjwani/LocusFocus

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

Language: JavaScript - Size: 76.7 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 8 - Forks: 4

statgen/localzoom

Make interactive LocusZoom plots from a local GWAS file

Language: Vue - Size: 5.76 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 4

MRCIEU/CAMERA Fork of yoonsucho/CAMERA

Mendelian Randomization approach using Cross Ancestral Model

Language: R - Size: 55 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

statgen/locuszoom-hosted

A web service to upload and share GWAS results with LocusZoom.js

Language: Python - Size: 3.42 MB - Last synced at: 4 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

PriyaLakr/Manhattan-plot

Script for designing a manhattan plot.

Language: Python - Size: 237 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

rivas-lab/degas-risk

Polygenic risk modeling with latent trait-related genetic components

Language: Jupyter Notebook - Size: 410 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

amorenooya/MasterThesis

R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".

Size: 37.1 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

RayDebashree/PLACO

A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

Language: R - Size: 164 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 14 - Forks: 4

lightning-auriga/gwas-winners-curse

tool for probabilistic correction of Winner's Curse in two-stage GWAS

Language: R - Size: 1.86 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

jiazhao97/BWMR

BWMR (Bayesian Weighted Mendelian Randomization)

Language: R - Size: 244 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 10 - Forks: 1

weinstockj/filter_somatic_variants_gwas_topmed

A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.

Language: Go - Size: 4.88 KB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jinghuazhao/TWAS-pipeline

TWAS-pipeline

Language: Shell - Size: 2.06 MB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 10 - Forks: 6

rivas-lab/mvpmm

MultiVariate Polygenic Mixture Model

Language: R - Size: 14.1 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 3

corbinq/GAMBIT

Tool for integrative gene-based association analysis using GWAS summary stats

Language: C++ - Size: 4.55 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 8 - Forks: 5

RayDebashree/GxE

Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.

Language: R - Size: 33.2 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0

adRn-s/ukbbgwas

Explore SNVs associated with any of UK BioBank Phenotypes, results were made publicly available by: http://www.nealelab.is/uk-biobank

Language: R - Size: 2.48 MB - Last synced at: 2 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jinghuazhao/hess-pipeline

HESS pipeline

Language: Shell - Size: 30.4 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

weichengv/genee

A Recalibrated Hypothesis Test for SNP-Level Summary Statistics

Language: R - Size: 43.9 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0