variani/finemapr

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

Language: R - Size: 1.2 MB - Last synced at: about 5 hours ago - Pushed at: about 1 month ago - Stars: 32 - Forks: 13

omerwe/polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Language: Python - Size: 219 MB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 122 - Forks: 25

esohkevin/ei-gwas

gwas workflow from raw intensity data to in-silico functional mapping

Language: Shell - Size: 15.5 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

mmkim1210/GeneticsMakie.jl

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Language: Julia - Size: 30.7 MB - Last synced at: 11 days ago - Pushed at: 4 months ago - Stars: 86 - Forks: 2

Kaan-glitch/EchoVerse

Record memories for your future self. Voice notes. Future unlock dates. Time-travel journaling redefined.

Language: TypeScript - Size: 151 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

jennasimit/flashfmZero

Latent factor GWAS; Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)

Language: R - Size: 7.33 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

Jianhua-Wang/easyfinemap

user-friendly pipeline for GWAS fine-mapping

Language: Python - Size: 50.6 MB - Last synced at: 10 days ago - Pushed at: 5 months ago - Stars: 11 - Forks: 2

czheluo/MBSA

Multple methods for BSA Pipeline

Language: R - Size: 2.41 MB - Last synced at: about 2 months ago - Pushed at: over 5 years ago - Stars: 7 - Forks: 4

gymrek-lab/happler

A haplotype-based fine-mapping method

Language: Jupyter Notebook - Size: 2.15 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 2 - Forks: 0

GangLiTarheel/DeepGWAS

DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network

Language: R - Size: 3.19 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 5 - Forks: 2

WansonChoi/HATK

A collection of modules to process and analyze IMGT-HLA sequences.

Language: Parrot - Size: 198 MB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 28 - Forks: 9

mancusolab/sushie

Software to perform multi-ancestry SNP fine-mapping on molecular data

Language: Python - Size: 1.03 MB - Last synced at: 9 months ago - Pushed at: 10 months ago - Stars: 14 - Forks: 3

sankaranlab/SCAVENGE

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

Language: R - Size: 38.5 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 73 - Forks: 34

naim-panjwani/LocusFocus

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

Language: JavaScript - Size: 76.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 4

giladturok/fine-mapping

Knowles Lab Research: determine which genetic variants cause a phenotype with non-binary functional annotations

Language: Python - Size: 78.2 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

RajLabMSSM/echoannot

echoverse module: Annotate fine-mapping results

Language: R - Size: 28.8 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Pintaius/LDmergeFM

Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.

Language: R - Size: 736 KB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

RajLabMSSM/echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

Language: R - Size: 6.86 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

caulilin/QTG_Seq

Language: R - Size: 8.64 MB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 20 - Forks: 10

RajLabMSSM/ggLocusZoom 📦

Create LocusZoom-style plots in R.

Language: R - Size: 36.1 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 15 - Forks: 4

RajLabMSSM/Fine_Mapping_Shiny

Shiny app for plotting and sharing fine-mapping results from echolocatoR

Language: R - Size: 2.31 GB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 3

cmomo/LocNet

This method incorporates dense linkage disequilibrium block structure of SNPs for prioritizing a set of genetic variants using GWAS summary statisticis before performing fine-mapping.

Language: HTML - Size: 13.4 MB - Last synced at: over 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

RajLabMSSM/echodata

echoverse module: Example data.

Language: R - Size: 14.2 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0