GitHub topics: colocalization

Repositories

ht-diva/pqtl_pipeline_finemap

Fine mapping analysis within the pQTL pipeline project

Language: R - Size: 27.4 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 0 - Forks: 0

mmkim1210/GeneticsMakie.jl

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Language: Julia - Size: 30.7 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 85 - Forks: 2

ropensci/colocr

An R package for conducting co-localization analysis. Edit

Language: R - Size: 5.68 MB - Last synced at: 7 days ago - Pushed at: over 5 years ago - Stars: 25 - Forks: 3

bencardoen/Colocalization.jl

Colocalization metrics and distances for images or their sparse representations.

Language: Julia - Size: 286 KB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

xqwen/fastenloc

Colocalization analysis of genetic association signals

Language: C++ - Size: 154 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 49 - Forks: 11

Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.

Language: Python - Size: 883 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0

alexiaales/SpotitPy

An automated tool for Object-based colocalization in fluorescence microscopy images.

Language: Python - Size: 25.7 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1

boxiangliu/locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

Language: R - Size: 1.09 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 76 - Forks: 15

tomouellette/pgxdisease 📦

Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"

Language: R - Size: 42 KB - Last synced at: 12 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

christacaggiano/caviar Fork of fhormoz/caviar

Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.

Language: C++ - Size: 1.41 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

tp81/scijava-spot-colocalization

Language: Jupyter Notebook - Size: 51.8 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

BCMSLab/colocrart

Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)

Language: R - Size: 3.26 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

RajLabMSSM/echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

Language: R - Size: 6.86 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

RajLabMSSM/echolocatoR

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Language: R - Size: 397 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 11

hwittich/Coloc Fork of annie-novak9/Coloc

COMP483 - Computational Biology final project at Loyola University Chicago

Language: R - Size: 354 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

RajLabMSSM/catalogueR

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

Language: R - Size: 105 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 1

strug-hub/UKBB_spirometry_on_COPD

Colocalization analysis of Meconium Ileus Genome-Wide Association Study (GWAS) (Gong et al., 2019) signal around SLC26A9 with spirometry association analysis in the UK Biobank and Spirometa Consortium (Shrine et., 2019) around the same region to elucidate whether there is a shared genetic contribution to disease

Language: HTML - Size: 10.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0