DanuserLab/u-track

Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events

Language: MATLAB - Size: 79.2 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 50 - Forks: 21

xsuite/xsuite

Suite of python packages for multiparticle simulations of particle accelerators.

Language: Python - Size: 60.5 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 43 - Forks: 28

qq1012510777/cuDFNsys

CUDA-based flow and transport simulations in DFNs

Language: Cuda - Size: 137 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

Geant4/geant4

Geant4 toolkit for the simulation of the passage of particles through matter - NIM A 506 (2003) 250-303

Language: C++ - Size: 349 MB - Last synced at: 3 days ago - Pushed at: 2 months ago - Stars: 716 - Forks: 344

ronshnapp/MyPTV

MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements

Language: Jupyter Notebook - Size: 81.9 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 61 - Forks: 20

AngelFP/Wake-T

A fast tracking code for plasma accelerators

Language: Python - Size: 4.13 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 35 - Forks: 17

DanuserLab/u-track3D

Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

Language: MATLAB - Size: 55.1 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 28 - Forks: 3

passaH2O/dorado

For shallow-water Lagrangian particle routing.

Language: Python - Size: 87.5 MB - Last synced at: 1 day ago - Pushed at: 19 days ago - Stars: 59 - Forks: 11

SIVERT-pCT/e2e-tracking

PyTorch implementation of "Exploring End-to-end Differentiable Neural Charged Particle Tracking -- A Loss Landscape Perspective".

Language: Python - Size: 7.24 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

ewanwm/LiquidRecO

Reconstruction library for a 3D LiquidO detector

Language: Python - Size: 33.5 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

GregWillmott/geant4-simulations

Collection of nuclear physics relevant simulations made using CERN toolkit Geant4 (https://github.com/Geant4/geant4).

Language: C++ - Size: 632 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

KATRIN-Experiment/Kassiopeia

Simulation of electric and magnetic fields and particle tracking

Language: C++ - Size: 83.1 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 47 - Forks: 29

derlin/hepqpr-qallse

The HEPQPR.Qallse project encodes the HEP (ATLAS) pattern recognition problem into a QUBO and solves it using a D-Wave or other classical QUBO libraries (qbsolv, neal). Master's project (2019).

Language: Jupyter Notebook - Size: 17.8 MB - Last synced at: 4 months ago - Pushed at: almost 6 years ago - Stars: 27 - Forks: 19

sonvijain/fluid-flow-visualizer

Interactive fluid flow visualization with MATLAB.

Language: MATLAB - Size: 4.88 KB - Last synced at: 6 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

aramyamal/iSCAT_PartikelSp-rning

Bachelor Thesis in Physics about evaluation and comparison of machine learning based particle tracking methods for iSCAT microscopy.

Language: Jupyter Notebook - Size: 5.36 MB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

mlysy/subdiff

R package for subdiffusive particles tracking

Language: R - Size: 2.29 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

OmegaProject/Omega

Open Microscopy Environment inteGrated Analysis (OMEGA) is a cross-platform data management, analysis and visualization system, for particle tracking data with particular emphasis on results from viral and vesicular trafficking experiments.

Language: Java - Size: 91.2 MB - Last synced at: 2 days ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 1

Henry-Sundland/Biophysics-Image-Analysis--Microfludics--Python---Analysis

These are python version of codes that I wrote to analyze images and videos of a macromolecule, that I took via fluorescence microscopy, in my research in grad school.

Language: Python - Size: 75.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

upc-ghs/modpath-omp

MODPATH-v7 plus parallel particles processing with OpenMP

Language: Fortran - Size: 13.4 MB - Last synced at: 6 months ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

acanbay/apricot

Particle Tracking Module for Python

Language: Python - Size: 4.22 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 2

uob-positron-imaging-centre/pept

Python library unifying Positron Emission Particle Tracking (PEPT) research, including tracking, simulation, data analysis and visualisation tools.

Language: Python - Size: 2.76 MB - Last synced at: 16 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 8

imzhangyd/MoTT

MoTT is the official repository of the paper "A Motion Transformer for Single Particle Tracking in Fluorescence Microscopy Images".

Language: Python - Size: 53.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 0

iwhoppock/boris-algorithm

The Boris algorithm for numerically tracing non-relativistic charged particles in electromagnetic fields, written in C, matlab, and python

Language: C - Size: 10.7 KB - Last synced at: 12 months ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2

kyleellefsen/pynsight

A Flika plugin. A clone of Insight2 in Python. This can be used to analyze 2D STORM microscopy movies.

Language: Python - Size: 43.9 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

VictorOnink/Particle-Trajectory-Analysis

Code to identify, track, analyse and visualize particle trajectories from video files for Bernal et al. (2022).

Language: Python - Size: 32.2 KB - Last synced at: 10 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

jabacousnac/Particle-Tracking

Rayleigh Sommerfeld Backpropagation Implementation for Colloids

Language: Jupyter Notebook - Size: 4.39 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

zaman13/Particle-Tracking-Code

A Matlab code for tracking colloidal fluorescent nanoparticles.

Language: Matlab - Size: 75.2 KB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 7 - Forks: 1

hansenjn/MultifocalImaging-AnalysisToolbox

A toolbox to analyze spherical and filamentous objects in multifocal images with high speed and high precision.

Language: MATLAB - Size: 140 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 2

savin-lab/potential-correction

A notebook to correct an energy landscape, as measured by particle tracking, for static and dynamic errors.

Language: Mathematica - Size: 24.4 KB - Last synced at: almost 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

alexiaales/SpotitPy

An automated tool for Object-based colocalization in fluorescence microscopy images.

Language: Python - Size: 25.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 1

Estudillo22/Particle_Tracking

Codigos para rastrear una particula activa sintetica y obtener su trayectoria.

Language: Python - Size: 79.1 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

MattiaVarrone/ParticleTracking

Track moving and rotating particles from video files.

Language: Python - Size: 10.7 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0

HJakeCunningham/ekman-stokes-microplastic-simulations

Code to generate wave-driven Ekman-Stokes Eulerian flow dataset and run particle tracking simulations

Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

selamgit/Irregular-Grid-for-Local-Otsu-Segmentation

Size: 11.2 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

valeriopagliarino/TANS-2023-UNITO-Public

Simplified software for Monte-Carlo simulation and reconstruction of primary vertices from a pixel tracking detector for high energy physics

Language: Makefile - Size: 12 MB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

sc0210/Particle-Tracking-OpenCV

Building an analysis tool to optimize Brownian motion experiment

Language: Jupyter Notebook - Size: 613 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

martijnende/microTrack

A particle tracking library

Language: Python - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

xli2522/CV-particle-trajectory

Computer vision for particle trajectories.

Language: Python - Size: 21.6 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

jlian/matlab-particle-tracker

An application in MATLAB used for tracking particles

Language: MATLAB - Size: 77.1 KB - Last synced at: 3 months ago - Pushed at: about 5 years ago - Stars: 6 - Forks: 3

Deep-learning-for-particle-tracking/YOLOv3-for-Particle-Tracking

Code and model weights for YOLOv3 trained for particle tracking on simulated data generated with the library Deeptrack. The code for simulating the training data is also found in this repository.

Language: Python - Size: 11.3 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

gnikit/Cloud-Chamber-particle-tracking

Tracks the trajectories of alpha and beta particles in a Cloud Chamber detector and exports the tracked trajectories along with the linear fit of the trajectories.

Language: C++ - Size: 142 MB - Last synced at: 5 months ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0

alihashmiii/SMtrack

single molecule tracking

Language: Mathematica - Size: 23.4 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 1

ricktjwong/millikan

Recognising charged oil drops in Millikan's oil drop experiment

Language: Python - Size: 6.24 MB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 2

darogan/ParticleStats

ParticleStats: Open source software for the analysis of intracellular particle motility and cytoskeletal polarity

Language: Python - Size: 8.69 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 1

OmegaProject/MIAPTE

Minimum Information About Particle Tracking Experiments (MIAPTE) guidelines

Size: 734 KB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

AndreaAnguiano/lagrangian_model_comparison

Language: Jupyter Notebook - Size: 34.2 MB - Last synced at: over 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

ryanstull/MatTrack

A particle tracking libary written in MATLAB

Language: Matlab - Size: 16.6 KB - Last synced at: 3 months ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 1