DIDSR/BoneJ_Headless

Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics

Language: Python - Size: 396 MB - Last synced: 29 days ago - Pushed: 7 months ago - Stars: 4 - Forks: 2

GReD-Clermont/omero_batch-plugin Fork of brau-frederic/mica_omero

Language: Java - Size: 2.39 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 5 - Forks: 0

UU-cellbiology/ZstackDepthColorCode

Z-stack Depth Colorcode ImageJ FIJI plugin

Language: Java - Size: 56.6 KB - Last synced: 4 days ago - Pushed: over 3 years ago - Stars: 21 - Forks: 6

vanTeeffelenLab/ExTrack

ExTrack MLE for diffusive noisy single-particle tracks

Language: Jupyter Notebook - Size: 8.59 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 10 - Forks: 4

brandon-hastings/Lumeleon

Package for animal pattern analysis, with machine learning for MICA Toolbox (beta)

Language: Python - Size: 125 KB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

amatov/AutomatedBlotQuantification

Language: Java - Size: 347 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 0

hansenjn/MultifocalImaging-AnalysisToolbox

A toolbox to analyze spherical and filamentous objects in multifocal images with high speed and high precision.

Language: MATLAB - Size: 140 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 2 - Forks: 2

L-EL/TreeJ

Fiji/ImageJ plugin to annotate a labeled image

Language: Java - Size: 70.9 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 1 - Forks: 0

ishibaki/awesome-imagej-plugins

😎 Awesome lists about ImageJ Plugins!

Size: 21.5 KB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

ivangtorre/multifrac

This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.

Language: Java - Size: 2.08 MB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 8 - Forks: 0

hansenjn/FreQ

An ImageJ plugin to analyze pixel intensity oscillations in time-lapse 2D images. For example, this allows to characterize the ciliary beat of multi-ciliated cells in time-lapse images acquired with a bright-field or phase-contrast microscope.

Language: Java - Size: 231 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

hansenjn/CiliaQ

An ImageJ plugin to quantify ciliary shape, length, and fluorescence.

Language: Java - Size: 20.4 MB - Last synced: 7 months ago - Pushed: 9 months ago - Stars: 6 - Forks: 2

UU-cellbiology/Correlescence

spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)

Language: Java - Size: 612 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 5 - Forks: 0

hansenjn/AdipoQ

A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.

Size: 95.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

ijtools/ijLabelMapToPolygons

ImageJ plugin that converts regions from label maps into polygons

Language: Java - Size: 18.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

swharden/PrairieView-Quick-Loader

ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders

Language: Java - Size: 66.4 KB - Last synced: 3 days ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

hansenjn/SpermQ

An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.

Language: Java - Size: 1.62 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 5 - Forks: 1

Turku-BioImaging/ColonyArea

ImageJ-plugin that is optimized to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes.

Language: ImageJ Macro - Size: 13.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

bruvellu/WormBox

Fiji/ImageJ plugin to help measuring linear distances.

Language: Python - Size: 1.59 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

berdal84/Mageek-Java

Mageek is an ImageJ Java plugin to batch process microscope images

Language: Java - Size: 262 KB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

hansenjn/CiliaQ_Preparator

An ImageJ plugin to prepare images for analysis using CiliaQ.

Language: Java - Size: 135 KB - Last synced: 7 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

hansenjn/ExtractSharpestPlane_JNH

ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.

Language: Java - Size: 56.6 KB - Last synced: 11 months ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

ijtools/sliding-strel

Morphological dilation and erosion using sliding structuring elements

Language: Java - Size: 50.8 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0