nicimov/3Dnucleus_data

A series of macros that enable efficient cropping, segmentation and analysis of the nuclei within .lif files.

Language: ImageJ Macro - Size: 153 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

j-pyl/exo-2-clr

Detection and analysis pipeline of exocytosis in two-channel microscopy with FIJI and R

Language: ImageJ Macro - Size: 2.78 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

MontpellierRessourcesImagerie/imagej_macros_and_scripts

ImageJ macros and scripts written at the imaging facility MRI

Language: Jupyter Notebook - Size: 17.1 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 33 - Forks: 16

sandorbx/Parallel-Fiji-CMTK-Registration

Bringing the powerfull CMTK registration tool to ImageJ, multi platform, parallel automatic batch processing, neat user interface, works out of the box.

Language: ImageJ Macro - Size: 42 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 3 - Forks: 0

gtatters/ThermImageJ

ImageJ functions and macros for working with thermal image files

Language: ImageJ Macro - Size: 18.4 MB - Last synced at: 21 days ago - Pushed at: 11 months ago - Stars: 49 - Forks: 6

smith6jt-cop/KINTSUGI

Jupyter notebook based multiplex image processing pipeline.

Language: Jupyter Notebook - Size: 475 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 0

quantixed/imagej-macros

quantixed FIJI update site

Language: ImageJ Macro - Size: 13.9 MB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 16 - Forks: 2

KeesStraatman/Delete-ROI

ImageJ/Fiji macro to delete ROIs from image, ROI manager and Results table

Size: 3.91 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

ElisabethKugler/GliaMorph

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Language: ImageJ Macro - Size: 166 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

IMBalENce/EM-tool

an ImageJ toolset for EM image analysis

Language: ImageJ Macro - Size: 43 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 6 - Forks: 2

Galtan-dev/Electroforetic-result-atuomatic-evaluation

Automatic evaluation of electroforesis results from photos

Language: ImageJ Macro - Size: 3.48 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

Sooperfish/Fiji-glTFsplitter Fork of lfang-salk/Batch-processing-toolkit

ImageJ/Fiji macro for bulk splitting glTF metallicRoughness.pngs back into their respective metallic, roughness and AO maps

Language: ImageJ Macro - Size: 23.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

DumontLab/Fiji-Code

Language: ImageJ Macro - Size: 26.4 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

MoritzNelle/HSI-analysis

Language: ImageJ Macro - Size: 6.84 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Deichmatrix/M4_ImageJ-Fiji_HUVEC_Sammelauswertung

Automatisiert Auswertung von Mikroskopbildern

Language: ImageJ Macro - Size: 37.1 KB - Last synced at: about 12 hours ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

Leo-KRUTTLI/MCZ-marco

A FIJI macro to automate merge, crop/resize and projection z

Language: ImageJ Macro - Size: 7.81 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

NOBIC-NTU/FIJI-Macros

FIJI/Image J macros created by NOBIC staff for microscopy facilities users

Language: ImageJ Macro - Size: 64.5 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

GiacomoGiacomelli/Cell-Profiles-and-Demographs

R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles

Language: R - Size: 8.4 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

acaccavano/deltaFoF

Set of ImageJ (FIJI) macros to import raw TIF images of time series Calcium imaging recordings, correct for photo-bleaching, identify regions of highest fluorescence change to assist in ROI placement, and calculate deltaF/F as a function of time for each ROI. Please cite Caccavano et. al. bioRxiv 2020.

Language: ImageJ Macro - Size: 24.4 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

pmascalchi/ImageJ_Export-LIF-as-Individual-Images

ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)

Language: ImageJ Macro - Size: 37.1 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 4

amironov21/ImageJ_stereology

Stereological macros for ImageJ

Language: ImageJ Macro - Size: 64.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

JGanChong/ImageJ-Codes

Compilation of ImageJ macros to do a wide variety of functions.

Language: ImageJ Macro - Size: 60.8 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

viktorek/fiji-interval-math

A simple ImageJ Fiji macro to apply maths to every nth slice in a single-channel image, e.g. average every 5 frames and similar.

Size: 4.88 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

maroiliop/Enrichment-Analysis

FIJI macros for Enrichment Analysis

Size: 444 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

boonepeter/snyder-imagej

A repository containing ImageJ macros for the Snyder Lab

Language: Python - Size: 43.9 KB - Last synced at: 9 months ago - Pushed at: almost 6 years ago - Stars: 2 - Forks: 1

Turku-BioImaging/split-and-merge

Fiji macro that splits and merges multi-dimensional TIFFs.

Language: ImageJ Macro - Size: 10.2 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

joda01/imagej_ev_colocalization 📦

Calculates the colocalization of EVs.

Size: 4.95 MB - Last synced at: almost 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

amarcog/Immunofluorescence_2D_Quantification

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

Language: ImageJ Macro - Size: 1.87 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

Turku-BioImaging/filopodia-counter

Fiji script for automated filopodia counting from single cell images.

Language: ImageJ Macro - Size: 3.33 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

assafna/cell-ecm-project

Quantifying the dynamics of long-range cell-cell mechanical communication paper code

Language: Python - Size: 3.03 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

monolyt/SliceNicer

ImageJ macro for normalization of time lapse images against a reference image

Language: ImageJ Macro - Size: 134 KB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

yakavetsiv/distribution-macro

Macros for ImageJ/FIJI

Language: ImageJ Macro - Size: 13.7 KB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

bruvellu/imagej-macros

Collection of macros for image processing in Fiji/ImageJ

Language: ImageJ Macro - Size: 40 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 0

MontpellierRessourcesImagerie/ij-macro-programming-workshop

The MRI workshop about ImageJ macro programming.

Language: TeX - Size: 63.4 MB - Last synced at: 6 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 1

zeserrado-marques/Quantification-of-protein-expression-inside-dark-patches

A macro to be used in Fiji

Language: ImageJ Macro - Size: 3.07 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

rsenft1/FISH-IHC-Colocalization-in-ImageJ

An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.

Size: 24.4 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 2

rsenft1/Fiji-Figure-Generator

Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata

Size: 2.1 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

MontpellierRessourcesImagerie/mripy

MRI ImageJ related python (jython) module.

Language: Python - Size: 721 KB - Last synced at: 6 months ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

sufyanshk/imagej

ImageJ macros and plugins.

Language: Rich Text Format - Size: 9.77 KB - Last synced at: 9 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1