Immunodynamics-Engel-Lab/msiflow

collection of mass spectrometry imaging workflows

Language: Python - Size: 40.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 9 - Forks: 1

labsyspharm/minerva-story

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

Language: HTML - Size: 269 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 53 - Forks: 14

AstroPathJHU/AstroPathPipeline

The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

Language: Python - Size: 1.28 GB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 3

neeson-lab/AMMIT

AMMIT is an R package designed to streamline the processing of immunofluorescence data.

Language: R - Size: 2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

valusty/image_analysis

Educational materials on image analysis with an focus on segmentation of axons and myelin in immunofluorescent images. Language: Ukrainian

Language: Jupyter Notebook - Size: 49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

kunlunW/UniFORM

UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging

Language: Jupyter Notebook - Size: 48.2 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

aminnaghdloo/slide-image-utils

A package for processing immunofluorescence (IF) microscopy image data.

Language: Python - Size: 215 KB - Last synced at: 8 days ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

SilMon/NucDetect

Python interface to detect and quantify intranuclear proteins

Language: Python - Size: 71.1 MB - Last synced at: 21 days ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0

himsr-lab/CU-IScore

IHC scoring of multi-channel images

Language: ImageJ Macro - Size: 43.4 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

d-wdj/thesis

Language: Python - Size: 378 KB - Last synced at: 10 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

duke-lungmap-team/odifmap

A Python library for segmentation and classification of objects in microscopy images

Language: Python - Size: 133 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 1

labsyspharm/minerva-author-ui

Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

Language: JavaScript - Size: 16.5 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 4 - Forks: 5

SilMon/DSB-Analysis-Notebook

A jupyter notebook about DNA double strand break analysis from fluorescence images using Python

Language: Jupyter Notebook - Size: 13.5 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0

ciccalab/SIMPLI

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

Language: R - Size: 45.2 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 26 - Forks: 4

eleni-chr/NMJ-MN-image-analysis-toolkit

Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

Language: MATLAB - Size: 177 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

labsyspharm/minerva-cloud-ui

Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.

Language: JavaScript - Size: 594 KB - Last synced at: 5 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 2

amarcog/Immunofluorescence_2D_Quantification

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

Language: ImageJ Macro - Size: 1.87 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

eleni-chr/cell-morphometry

Morphometric analysis of cells in microscopy images.

Language: MATLAB - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

SCCH-KVS/NuclearSegmentationPipeline Fork of perlfloccri/NuclearSegmentationPipeline

Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation

Language: JavaScript - Size: 23.7 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1

labsyspharm/minerva-cloud

Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.

Language: Python - Size: 337 KB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 4

duke-lungmap-team/lungmap-pipeline

Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images

Language: Python - Size: 85.9 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1