aminnaghdloo/slide-image-utils

A package for processing immunofluorescence (IF) microscopy image data.

Language: Python - Size: 143 KB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

labsyspharm/minerva-story

Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

Language: HTML - Size: 269 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 49 - Forks: 14

labsyspharm/minerva-cloud

Minerva Cloud is a novel cloud-native (AWS) platform for high-dimensional microscopy image storage, management, and visualization.

Language: Python - Size: 337 KB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 2 - Forks: 4

duke-lungmap-team/odifmap

A Python library for segmentation and classification of objects in microscopy images

Language: Python - Size: 133 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 1

labsyspharm/minerva-author-ui

Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

Language: JavaScript - Size: 3.67 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 4 - Forks: 5

SilMon/DSB-Analysis-Notebook

A jupyter notebook about DNA double strand break analysis from fluorescence images using Python

Language: Jupyter Notebook - Size: 13.5 MB - Last synced: 9 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

ciccalab/SIMPLI

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

Language: R - Size: 45.2 MB - Last synced: 10 months ago - Pushed: 11 months ago - Stars: 26 - Forks: 4

SilMon/NucDetect

Python interface to detect and quantify intranuclear proteins

Language: Python - Size: 66 MB - Last synced: 20 days ago - Pushed: about 2 months ago - Stars: 3 - Forks: 0

eleni-chr/NMJ-MN-image-analysis-toolkit

Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.

Language: MATLAB - Size: 177 KB - Last synced: 11 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

labsyspharm/minerva-cloud-ui

Minerva Cloud is a novel cloud-based (AWS) software for high-dimensional image management, storage and visualization.

Language: JavaScript - Size: 594 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 2

christianrickert/CU-IScore

IHC scoring of multi-channel images

Language: ImageJ Macro - Size: 43.4 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

kelesfatih/Immunofluorescence-Staining-Coloring-with-ImageJ

Language: ImageJ Macro - Size: 4.88 KB - Last synced: 11 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

amarcog/Immunofluorescence_2D_Quantification

Versatile Fiji-imagej macro for 2D quantification of each marker inside your immunofluorescence staining in less of 1 minute per image. Control critical steps for segmentation.

Language: ImageJ Macro - Size: 1.87 MB - Last synced: 5 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

eleni-chr/cell-morphometry

Morphometric analysis of cells in microscopy images.

Language: MATLAB - Size: 26.4 KB - Last synced: 5 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

SCCH-KVS/NuclearSegmentationPipeline Fork of perlfloccri/NuclearSegmentationPipeline

Code for the paper: Deep Learning architectures for generalized immunofluorescence based nuclear image segmentation

Language: JavaScript - Size: 23.7 MB - Last synced: over 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

duke-lungmap-team/lungmap-pipeline

Complete analysis pipeline for the segmentation & classification of structures / cells for LungMap images

Language: Python - Size: 85.9 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 1