GitHub topics: batch-effect
epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
Language: R - Size: 102 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 19 - Forks: 3
Mohammad-Bakhtiari/fedscgen-pypi
A lightweight, pip-installable version of FedscGen.
Language: Python - Size: 578 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
HSU-HPC/BERT
Batch-Effect Reduction Trees
Language: R - Size: 165 KB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0
HelloWorldLTY/AWGAN
Codes for paper: AWGAN: A Powerful Batch Effect Removal Model for scRNA-seq Data
Language: Jupyter Notebook - Size: 79.1 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0
christinehou11/BatchSVG
Identification of biased features from SVGs in spatial transcriptomics data
Language: R - Size: 15.5 MB - Last synced at: 22 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 0
kunlunW/UniFORM
UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging
Language: Jupyter Notebook - Size: 48.2 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
eleozzr/desc-nopage
Deep Embedding for Single-cell Clustering. This repo has no files related to github page so that users can download it quickly.
Language: Jupyter Notebook - Size: 27.9 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0
