GitHub topics: count-matrix
epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
Language: R - Size: 101 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 18 - Forks: 3
showteeth/DEbPeak
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
Language: HTML - Size: 94.4 MB - Last synced at: 7 months ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 1
FarhanaRiaz123/Pangenome-Analysis
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
Language: Python - Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
