Data

Tools

Indexes

Applications

Experiments

Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: gene-family

hahnlab/CAFE5

Version 5 of the CAFE phylogenetics software

Language: C++ - Size: 3.13 MB - Last synced at: 9 days ago - Pushed at: 5 months ago - Stars: 134 - Forks: 25

josuebarrera/GenEra

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Language: Shell - Size: 74.9 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 46 - Forks: 7

FarhanaRiaz123/Pangenome-Analysis

Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.

Language: Python - Size: 4.88 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0

arzwa/Beluga.jl

Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC

Language: Julia - Size: 4.03 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 2

Related Keywords
bioinformatics 4 gene-family 4 phylogenetics 2 comparative-genomics 1 founder-events 1 founder-gene 1 gene-age 1 genera 1 genomics 1 phylostratigraphy 1 accessory-genes 1 annotation 1 binary-matrix 1 bioinformatics-analysis 1 biology 1 clustering 1 coregenome 1 count-matrix 1 downstream-analysis 1 duplicates-removal 1 gene-families 1 orthomcl 1 pangenome 1 pangenome-inference 1 pangenome-pipeline 1 plasmodium 1 proteome-clustering 1 singletons 1 bayesian-inference 1 evolution 1 reversible-jump-mcmc 1